B
    bd#                 @   sP   d Z ddlmZmZmZ ddlZddlmZ ddlZdd Z	G dd de
ZdS )	aI  
Analyzer and Parser for MultiNest output files
===============================================

Use like so::
	
	# create analyzer object
	a = Analyzer(n_params, outputfiles_basename = "chains/1-")
	
	# get a dictionary containing information about
	#   the logZ and its errors
	#   the individual modes and their parameters
	#   quantiles of the parameter posteriors
	stats = a.get_stats()
	
	# get the best fit (highest likelihood) point
	bestfit_params = a.get_best_fit()
	
	# iterate through the "posterior chain"
	for params in a.get_equal_weighted_posterior():
		print params


    )absolute_importunicode_literalsprint_functionN)StringIOc             C   s$   yt j| ddS    t | S d S )N   )Zndmin)numpyZloadtxt)Zintext r   `/work/yifan.wang/ringdown/master-ringdown-env/lib/python3.7/site-packages/pymultinest/analyse.py	loadtxt2d    s    r
   c               @   s\   e Zd ZdZdddZdd Zdd	 Zd
d Zdd ZdddZ	dd Z
dd Zdd ZdS )Analyzerz
		Class for accessing the output of MultiNest.
		
		After the run, this class provides a mean of reading the result
		in a structured way.
		
		chains/1-Tc             C   sR   || _ || _d| j  | _|r*td| j  d| j  | _d| j  | _d| j  | _d S )Nz%s.txtz  analysing data from %sz%spost_separate.datz%sstats.datz%spost_equal_weights.dat)outputfiles_basenamen_params	data_fileprintZ	post_file
stats_fileequal_weighted_file)selfr   r   verboser   r   r	   __init__.   s    zAnalyzer.__init__c             C   s   t | dst| j| _| jS )z
			fetches self.data_file
		data)hasattrr
   r   r   )r   r   r   r	   get_dataQ   s    
zAnalyzer.get_datac             C   s   t | dst| j| _| jS )z
			fetches self.data_file
		equal_weighted_posterior)r   r
   r   r   )r   r   r   r	   get_equal_weighted_posteriorX   s    
z%Analyzer.get_equal_weighted_posteriorc             C   sL   | dd\}}|d }|d }| d\}}|t|t|fS )Nz      z: z +/- )splitstripfloat)r   lnamevaluesverrorr   r   r	   _read_error_line`   s
    zAnalyzer._read_error_linec             C   s0   |  |\}}}||| < ||d|  < d S )Nz%s error)r$   lower)r   r   dr    r"   r#   r   r   r	   _read_error_into_dicti   s    zAnalyzer._read_error_into_dictNc             C   sp   |d kr| dd\}}n|}| dd\}}tt|}|d k	rR|||  < t|jdkrlt|d}|S )N
r   )r   )	r   r
   r   r   r%   lenshaper   Zreshape)r   txtr&   titletableheaderr   r   r   r	   _read_tablem   s    zAnalyzer._read_tablec                s~  |   }g }xZtd|jd D ]D}tt|d d df |d d |f   jdd d t   d d df   d d df< d}d}d	}d
} fdd}|d| }	||}
|d| }||}|d| }||}|d| }||}|d}|d}|d}|d}|d}|d}|d}|	||
|	 d |	|
g||g||g||g||||||d q W | 
 }||d< |S )Nr   r   r   c             S   s   | d S )Nr   r   )xr   r   r	   <lambda>       z$Analyzer.get_stats.<locals>.<lambda>)keyg`P^?gD?g333333?g\C?c                s4   t j|  d d df  d d df  d  d dS )Nr   r   )r   r   )r)   r   )leftright)r   Zinterp)r1   )br   r	   r2      r3   g      ?g      ?g      ?gGz?g{Gz?g?g?g       @)mediansigmaZ1sigmaZ2sigmaZ3sigmaZ5sigmazq75%zq25%zq99%zq01%zq90%zq10%Z	marginals)r   ranger+   listzipsortr   arrayZcumsumappendget_mode_stats)r   Z	posteriorstatsiZsig5Zsig3Zsig2Zsig1ZbiZlow1Zhigh1Zlow2Zhigh2Zlow3Zhigh3Zlow5Zhigh5r8   q1Zq3Zq99Zq01Zq90Zq10Z
mode_statsr   )r7   r	   	get_statsz   sV    &
 
zAnalyzer.get_statsc          	   C   s  t | j}| }W dQ R X dg i}| |d | d |krb|d  |d< |d  |d< d|d	 kr| |d	 | |d  }|d
  }||d< ||d< d|dd }d}|d}d|i}	||	d < ||	d < ||	d < ||	d < | j|d dd}
|
ddd	f  |	d< |
dddf  |	d< | |d	 ddd	f  |	d< | |d ddd	f  |	d< |d 	|	 n
d|}|d}|d= d}x|D ]}|d}d|i}	|d	 }|d d}| |d	 |	 | |d |	 | j|d	 dd}
|
ddd	f  |	d< |
dddf  |	d< | |d ddd	f  |	d< | |d ddd	f  |	d< |d 	|	 qW |S )z_
			information about the modes found:
			mean, sigma, maximum a posterior in each dimension
		Nmodesr   z#Nested Sampling Global Log-Evidencezglobal evidencez)Nested Sampling Global Log-Evidence errorzglobal evidence errorz.Nested Importance Sampling Global Log-Evidencer   z4Nested Importance Sampling Global Log-Evidence error    z

indexzStrictly Local Log-Evidencez!Strictly Local Log-Evidence errorzLocal Log-EvidencezLocal Log-Evidence errorZ
Parameters)r-   Zmeanr   r9   maximumzmaximum a posteriorz


r(   )
openr   	readlinesr'   r%   joinr   r0   tolistr?   )r   filelinesrA   ZZZerrtextrB   Z	modelinesmodetpartspZ
modelines1r   r   r	   r@      sZ    
""



""zAnalyzer.get_mode_statsc             C   sJ   |   }d|d d df   }|| }td|d  t|dd  dS )Ng      r   r   )Zlog_likelihood
parameters)r   Zargmaxr   r;   )r   r   rB   Zlastrowr   r   r	   get_best_fit   s
    zAnalyzer.get_best_fit)r   T)NN)__name__
__module____qualname____doc__r   r   r   r$   r'   r0   rD   r@   rW   r   r   r   r	   r   &   s   
#	
3Dr   )r[   
__future__r   r   r   r   ior   rer
   objectr   r   r   r   r	   <module>   s   