B
    d0                 @   s   d Z ddlZddlmZmZmZmZ ddlmZmZ ddl	m
Z
mZ dZdZdZdZd	d
 ZdddZdddZdd Zdd ZdS )z%Utilites to estimate PSDs from data.
    N)ArrayFrequencySeries
TimeSerieszeros)real_same_precision_ascomplex_same_precision_as)fftifftFiH&ihc             C   sv   t | tk	s| dkrtd| dkr.tdS d}x>td| d d d D ]$}|dd| d  dd|   7 }qJW |S )a  Calculate the bias of the median average PSD computed from `n` segments.

    Parameters
    ----------
    n : int
        Number of segments used in PSD estimation.

    Returns
    -------
    ans : float
        Calculated bias.

    Raises
    ------
    ValueError
        For non-integer or non-positive `n`.

    Notes
    -----
    See arXiv:gr-qc/0509116 appendix B for details.
    r   zn must be a positive integeri        g      ?)typeint
ValueErrornumpylogrange)nZansi r   _/work/yifan.wang/ringdown/master-ringdown-env/lib/python3.7/site-packages/pycbc/psd/estimate.pymedian_bias#   s    
$r         hannmedianc             C   sz  ddl m} dtji}t|tjr4|j|kr4tdt|tjsV||krVtd||dkrftdt	|t
k	st	|t
k	s|dks|dkrtd| jd	krtj}	n| jd
krtj}	t| }
|dkrt
|
| }|d | | |
kr|d8 }|sx|d | | }||
k rR|
| }|d }|
|d  }|d r>|d }| || } t| }
||
krxd| }|d7 }|d|
 7 }|
|d | | krtdt|tjs|| |}t|| j}d| j | }tsttt
|d d ||	d}g }xt|D ]}|| }|| }| || }t||ks4ttsJt|| | n||| td}t||   }|d  d  < |d  d  < || qW t|}|dkrtj|dd}n|dkrtj|ddt | }nf|dkrJ|ddd }|ddd }tj|ddt t| }tj|ddt t| }|| d }|d| | || !  9 }t||| j| j"dS )a  PSD estimator based on Welch's method.

    Parameters
    ----------
    timeseries : TimeSeries
        Time series for which the PSD is to be estimated.
    seg_len : int
        Segment length in samples.
    seg_stride : int
        Separation between consecutive segments, in samples.
    window : {'hann', numpy.ndarray}
        Function used to window segments before Fourier transforming, or
        a `numpy.ndarray` that specifies the window.
    avg_method : {'median', 'mean', 'median-mean'}
        Method used for averaging individual segment PSDs.

    Returns
    -------
    psd : FrequencySeries
        Frequency series containing the estimated PSD.

    Raises
    ------
    ValueError
        For invalid choices of `seg_len`, `seg_stride` `window` and
        `avg_method` and for inconsistent combinations of len(`timeseries`),
        `seg_len` and `seg_stride`.

    Notes
    -----
    See arXiv:gr-qc/0509116 for details.
    r   )execute_cached_fftr   z'Invalid window: incorrect window lengthz#Invalid window: unknown window {!r})meanr   zmedian-meanzInvalid averaging methodz3Segment length and stride must be positive integersZsingledoubleNr   r
   z$I was asked to estimate a PSD on %d z6data samples. However the data provided only contains z%d data samples.z+Incorrect choice of segmentation parametersg      ?)delta_fdtype)uidr   )Zaxisr   zmedian-mean)r   r   epoch)#pycbc.strain.strainr   r   hanning
isinstanceZndarraysizer   formatr   r   	precisionZ	complex64Z
complex128lenr   Zastyper   delta_tUSE_CACHING_FOR_WELCH_FFTSr   r   r   AssertionErrorr   WELCH_UNIQUE_IDabsconjappendarrayr   r   r   sum
start_time)Z
timeseriesZseg_lenZ
seg_strideZwindowZ
avg_methodZnum_segmentsZrequire_exact_data_fitr   Z
window_mapZfs_dtypeZnum_samplesdata_lendiffstartenderr_msgwr   Zsegment_tildeZsegment_psdsr   Zsegment_startZsegment_endsegmentZseg_psdpsdZodd_psdsZ	even_psdsZ
odd_medianZeven_medianr   r   r   welchB   s    "










r<   c             C   s  ddl m}m} t|tk	s$|dkr,td|dk	rR|dk sJ|| jd krRtdt| d d }tt	t| | j
t| d	}d}|rt|| j
 }d
| ||d   d |||d < tstt	||| j
 t| d}	t||	 n||dtd}	|d }
||d  }||
k rtd|dkrvtt||	jd}|	d|
  ||
 d 9  < |	||  |d|d  9  < |
|k rd|	|
|< tstt	t| | j
t| d	}t|	| n||	dtd}|| 9 }d
t| }|S )a  Modify a PSD such that the impulse response associated with its inverse
    square root is no longer than `max_filter_len` time samples. In practice
    this corresponds to a coarse graining or smoothing of the PSD.

    Parameters
    ----------
    psd : FrequencySeries
        PSD whose inverse spectrum is to be truncated.
    max_filter_len : int
        Maximum length of the time-domain filter in samples.
    low_frequency_cutoff : {None, int}
        Frequencies below `low_frequency_cutoff` are zeroed in the output.
    trunc_method : {None, 'hann'}
        Function used for truncating the time-domain filter.
        None produces a hard truncation at `max_filter_len`.

    Returns
    -------
    psd : FrequencySeries
        PSD whose inverse spectrum has been truncated.

    Raises
    ------
    ValueError
        For invalid types or values of `max_filter_len` and `low_frequency_cutoff`.

    Notes
    -----
    See arXiv:gr-qc/0509116 for details.
    r   )r   execute_cached_ifftz)max_filter_len must be a positive integerNr!   z<low_frequency_cutoff must be within the bandwidth of the PSDr   r
   )r   r   g      ?g      ?)r*   r   F)Zcopy_outputr    z,Invalid value in inverse_spectrum_truncationr   )r   )r#   r   r=   r   r   r   sample_frequenciesr)   r   r   r   r   USE_CACHING_FOR_INV_SPEC_TRUNCr   r   r   r	   INVSPECTRUNC_UNIQUE_IDr   r$   r   r   r/   r.   )r;   Zmax_filter_lenZlow_frequency_cutoffZtrunc_methodr   r=   NZinv_asdZkminqZtrunc_startZ	trunc_endZtrunc_windowZ	psd_truncZpsd_outr   r   r   inverse_spectrum_truncation   sV    $

 
rC   c             C   s\   t | d | j | d }tdt|| }t|| j |  }t|| j|| j	dS )al  Return a new PSD that has been interpolated to the desired delta_f.

    Parameters
    ----------
    series : FrequencySeries
        Frequency series to be interpolated.
    delta_f : float
        The desired delta_f of the output

    Returns
    -------
    interpolated series : FrequencySeries
        A new FrequencySeries that has been interpolated.
    r   r   )r"   r   r   )
r)   r   r   ZarangeZrintZinterpr>   r   r"   r   )seriesr   new_nZsamplesinterpolated_seriesr   r   r   interpolate$  s
    rG   c       	      C   s   t | t| | jd} t| d d }d| j | }td||  }|d d }tt|t| |d}t| | tt||j	|d}|d|d  |d|d < ||d | |||d  |< t t|| j	|d}t
|| |S )al  Return a new PSD that has been interpolated to the desired delta_f.

    Parameters
    ----------
    series : FrequencySeries
        Frequency series to be interpolated.
    delta_f : float
        The desired delta_f of the output

    Returns
    -------
    interpolated series : FrequencySeries
        A new FrequencySeries that has been interpolated.
    )r   r   r   r
   g      ?)r   r*   r   )r   r   r   r)   r   r   r   r   r	   r   r   )	rD   r   rA   r*   Znew_NrE   Zseries_in_timeZpadded_series_in_timerF   r   r   r   bandlimited_interpolate9  s    
 
rH   )r   r   r   r   NF)NN)__doc__r   Zpycbc.typesr   r   r   r   r   r   Z	pycbc.fftr   r	   r+   r?   r-   r@   r   r<   rC   rG   rH   r   r   r   r   <module>   s    
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