B
    zd'                 @   sf   d dl mZmZmZmZ dgZd dlZd dlZddl	m
Z
 ddl	mZ ejddG d	d deZdS )
    )absolute_importdivisionprint_functionunicode_literalsChainN   )util)ensembleT)slotsc               @   s<  e Zd ZejejdZejeddZeje	j
dddZeje	j
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dddZeje	j
dddZeje	j
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ddZeje	j
ddZeje	j
ddZdd Zed	d
 Zedd Zedd Zedd Zedd Zedd Zedd Zedd Zdd Zdd Zd#ddZ d$d!d"Z!dS )%r   )typeN)r   defaultF)r   initr   )r   r   c             C   s   | j d krd| _ td| j| j| jft| _td| j| jft| _td| j| jft| _	td| jft| _
t| j| jf| _t| j| jf| _t| jd | _t| jd | _d S )Nr   r   )thin_bynpemptyntempsnwalkersndimfloatxlogPloglbetaszerosjumps_proposedjumps_acceptedswaps_proposedswaps_accepted)self r   Z/work/yifan.wang/ringdown/master-ringdown-env/lib/python3.7/site-packages/ptemcee/chain.py__attrs_post_init__   s    
zChain.__attrs_post_init__c             C   s   | j jd S )Nr   )r   shape)r   r   r   r    length)   s    zChain.lengthc             C   s   | j jS )N)r	   time)r   r   r   r    r$   -   s    z
Chain.timec             C   s   | j jS )N)r	   r   )r   r   r   r    r   1   s    zChain.ntempsc             C   s   | j jS )N)r	   r   )r   r   r   r    r   5   s    zChain.nwalkersc             C   s   | j jS )N)r	   r   )r   r   r   r    r   9   s    z
Chain.ndimc             C   s   | j | j S )N)r   r   )r   r   r   r    jump_acceptance_ratio=   s    zChain.jump_acceptance_ratioc             C   s   | j | j S )N)r   r   )r   r   r   r    swap_acceptance_ratioA   s    zChain.swap_acceptance_ratioc             C   s,   |f| j dd   }tj| t|fddS )Nr   r   )axis)r"   r   Zconcatenater   )arraycountr"   r   r   r    _resizeE   s    zChain._resizec             C   st   | j  }| j }| j }| j }x| |D ]}q4W | j | }| j| }| j| }	| j| }
|| |
|	 fS )N)r   copyr   r   r   iterate)r   r)   Zjp0Zja0Zsp0Zsa0_jpjaspsar   r   r    runJ   s    







z	Chain.runc             c   s  | j }| | j|| _| | j|| _| | j|| _| | j|| _xt||| D ]}xdt| jD ]V}| j	  |  j
| jj
7  _
|  j| jj7  _|  j| jj7  _|  j| jj7  _qfW | jj| j|< | jj| j|< | jj| j|< | jj| j|< | jV  qVW d S )N)r#   r*   r   r   r   r   ranger   r	   stepr   r   r   r   )r   r)   startir-   r   r   r    r,   W   s"    
zChain.iterate2   c             C   sl   t | j| jf}xTt| jD ]F}t j| jd d |d d d d f dd}tj||d||d d f< qW |S )Nr   )r'   )window)	r   r   r   r   r3   meanr   r   Zget_integrated_act)r   r8   Zactsr6   r   r   r   r    get_actsk   s
    (zChain.get_acts皙?c             C   sT   t | jjd | d }tjtj| jdd|dddf dd}t| jd |S )ap  
        Thermodynamic integration estimate of the evidence for the sampler.

        :param fburnin: (optional)
            The fraction of the chain to discard as burnin samples; only the
            final ``1-fburnin`` fraction of the samples will be used to
            compute the evidence; the default is ``fburnin = 0.1``.
        :return ``(logZ, dlogZ)``: Returns an estimate of the
            log-evidence and the error associated with the finite
            number of temperatures at which the posterior has been
            sampled.
        For details, see ``thermodynamic_integration_log_evidence``.

        r   g      ?   )r'   N)intr   r"   r   r9   r   Z&thermodynamic_integration_log_evidencer   )r   ZfburninistartZ
mean_loglsr   r   r    log_evidence_estimates   s    *zChain.log_evidence_estimate)r7   )r;   )"__name__
__module____qualname__attribr	   ZEnsembler>   r   r   Zndarrayr   r   r   r   r   r   r   r   r!   propertyr#   r$   r   r   r   r%   r&   staticmethodr*   r2   r,   r:   r@   r   r   r   r    r      s.   
)
__future__r   r   r   r   __all__rD   numpyr    r   r	   sobjectr   r   r   r   r    <module>   s   