Generating concrete workflow 2021.11.17 16:23:26.644 GMT: [DEBUG] Property Key pegasus.integrity.checking already set to nosymlink. Will not be set to - none 2021.11.17 16:23:26.654 GMT: [DEBUG] Property Key condor.periodic_remove already set to (JobStatus == 5) && ((CurrentTime - EnteredCurrentStatus) > 43200). Will not be set to - (JobStatus == 5) && ((CurrentTime - EnteredCurrentStatus) > 30) 2021.11.17 16:23:26.655 GMT: [INFO] Planner launched in the following directory /work/yifan.wang/4ogc/prod190425/190425_output 2021.11.17 16:23:26.655 GMT: [INFO] Planner invoked with following arguments --conf ./pegasus-properties.conf --output-sites local --sites local,condorpool_shared --staging-site local=local,condorpool_shared=condorpool_shared --cluster label,horizontal --cleanup inplace --relative-dir work -vvv --dir /local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb --submit --forward nogrid 190425.dax 2021.11.17 16:23:26.657 GMT: [CONFIG] Pegasus Properties set by the user 2021.11.17 16:23:26.661 GMT: [CONFIG] pegasus.catalog.replica.cache.asrc=true 2021.11.17 16:23:26.662 GMT: [CONFIG] pegasus.catalog.replica.dax.asrc=true 2021.11.17 16:23:26.662 GMT: [CONFIG] pegasus.catalog.workflow.amqp.url=amqp://friend:donatedata@msgs.pegasus.isi.edu:5672/prod/workflows 2021.11.17 16:23:26.662 GMT: [CONFIG] pegasus.dir.staging.mapper=Flat 2021.11.17 16:23:26.662 GMT: [CONFIG] pegasus.dir.storage.mapper=Replica 2021.11.17 16:23:26.662 GMT: [CONFIG] pegasus.dir.storage.mapper.replica=File 2021.11.17 16:23:26.663 GMT: [CONFIG] pegasus.dir.storage.mapper.replica.file=output.map 2021.11.17 16:23:26.663 GMT: [CONFIG] pegasus.dir.submit.mapper=Named 2021.11.17 16:23:26.663 GMT: [CONFIG] pegasus.file.cleanup.scope=deferred 2021.11.17 16:23:26.663 GMT: [CONFIG] pegasus.home.bindir=/software/tools/pegasus/5.0/bin 2021.11.17 16:23:26.663 GMT: [CONFIG] pegasus.home.schemadir=/software/tools/pegasus/5.0/share/pegasus/schema 2021.11.17 16:23:26.663 GMT: [CONFIG] pegasus.home.sharedstatedir=/software/tools/pegasus/5.0/share/pegasus 2021.11.17 16:23:26.664 GMT: [CONFIG] pegasus.home.sysconfdir=/software/tools/pegasus/5.0/etc 2021.11.17 16:23:26.664 GMT: [CONFIG] pegasus.integrity.checking=nosymlink 2021.11.17 16:23:26.664 GMT: [CONFIG] pegasus.metrics.app=ligo-pycbc 2021.11.17 16:23:26.664 GMT: [CONFIG] pegasus.mode=development 2021.11.17 16:23:26.664 GMT: [CONFIG] pegasus.monitord.encoding=json 2021.11.17 16:23:26.664 GMT: [CONFIG] pegasus.register=False 2021.11.17 16:23:26.665 GMT: [CONFIG] pegasus.selector.replica=Regex 2021.11.17 16:23:26.665 GMT: [CONFIG] pegasus.selector.replica.regex.rank.1=file://(?!.*(cvmfs)).* 2021.11.17 16:23:26.665 GMT: [CONFIG] pegasus.selector.replica.regex.rank.2=file:///cvmfs/.* 2021.11.17 16:23:26.665 GMT: [CONFIG] pegasus.selector.replica.regex.rank.3=root://.* 2021.11.17 16:23:26.665 GMT: [CONFIG] pegasus.selector.replica.regex.rank.4=gsiftp://red-gridftp.unl.edu.* 2021.11.17 16:23:26.666 GMT: [CONFIG] pegasus.selector.replica.regex.rank.5=gridftp://.* 2021.11.17 16:23:26.666 GMT: [CONFIG] pegasus.selector.replica.regex.rank.6=.* 2021.11.17 16:23:26.666 GMT: [CONFIG] pegasus.transfer.bypass.input.staging=true 2021.11.17 16:23:26.666 GMT: [CONFIG] pegasus.transfer.links=true 2021.11.17 16:23:27.169 GMT: [INFO] event.pegasus.add.data-dependencies dax.id 190425.dax-0 - STARTED 2021.11.17 16:23:27.169 GMT: [INFO] event.pegasus.add.data-dependencies dax.id 190425.dax-0 (0.0 seconds) - FINISHED 2021.11.17 16:23:27.211 GMT: [DEBUG] Parsed DAX with following metrics {"compute_tasks":0,"dax_tasks":2,"dag_tasks":0,"total_tasks":2,"deleted_tasks":0,"dax_input_files":4,"dax_inter_files":0,"dax_output_files":0,"dax_total_files":4,"compute_jobs":0,"clustered_jobs":0,"si_tx_jobs":0,"so_tx_jobs":0,"inter_tx_jobs":0,"reg_jobs":0,"cleanup_jobs":0,"create_dir_jobs":0,"dax_jobs":2,"dag_jobs":0,"chmod_jobs":0,"total_jobs":2,"mDAXLabel":"190425.dax"} 2021.11.17 16:23:27.214 GMT: [CONFIG] Loading site catalog file /work/yifan.wang/4ogc/prod190425/190425_output/sites.yml 2021.11.17 16:23:27.214 GMT: [DEBUG] All sites will be loaded from the site catalog 2021.11.17 16:23:27.215 GMT: [DEBUG] event.pegasus.parse.site-catalog site-catalog.id /work/yifan.wang/4ogc/prod190425/190425_output/sites.yml - STARTED 2021.11.17 16:23:27.359 GMT: [DEBUG] event.pegasus.parse.site-catalog site-catalog.id /work/yifan.wang/4ogc/prod190425/190425_output/sites.yml (0.142 seconds) - FINISHED 2021.11.17 16:23:27.359 GMT: [DEBUG] Sites loaded are [osg, condorpool_shared, condorpool_symlink, condorpool_copy, local] 2021.11.17 16:23:27.362 GMT: [CONFIG] Set environment profile for local site PATH=/software/tools/pegasus/5.0/bin/:/work/yifan.wang/virtualenv/4ogc/bin:/work/yifan.wang/lscsoft/opt/accomlal/bin:/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games 2021.11.17 16:23:27.362 GMT: [CONFIG] Set environment profile for local site PYTHONPATH=/software/tools/pegasus/5.0/lib/python3.7/dist-packages/:/work/yifan.wang/eccsearch/waveform/ihes-teobresum/Python:/work/yifan.wang/eccsearch/eccwaveform:/work/yifan.wang/1-ecc-waveform-PE/IMRPhenomDecc:/work/yifan.wang/lscsoft/src/TaylorF2e: 2021.11.17 16:23:27.364 GMT: [CONFIG] Constructed default site catalog entry for condorpool site condor 2021.11.17 16:23:27.455 GMT: [DEBUG] Mount Under Scratch Directories [/tmp, /var/tmp] 2021.11.17 16:23:27.456 GMT: [DEBUG] Style detected for site osg is class edu.isi.pegasus.planner.code.generator.condor.style.Condor 2021.11.17 16:23:27.456 GMT: [DEBUG] Style detected for site condorpool_shared is class edu.isi.pegasus.planner.code.generator.condor.style.Condor 2021.11.17 16:23:27.457 GMT: [DEBUG] Style detected for site condorpool is class edu.isi.pegasus.planner.code.generator.condor.style.Condor 2021.11.17 16:23:27.457 GMT: [DEBUG] Style detected for site condorpool_symlink is class edu.isi.pegasus.planner.code.generator.condor.style.Condor 2021.11.17 16:23:27.457 GMT: [DEBUG] Style detected for site condorpool_copy is class edu.isi.pegasus.planner.code.generator.condor.style.Condor 2021.11.17 16:23:27.458 GMT: [DEBUG] Style detected for site local is class edu.isi.pegasus.planner.code.generator.condor.style.Condor 2021.11.17 16:23:27.459 GMT: [DEBUG] Execution sites are [condorpool_shared, local] 2021.11.17 16:23:27.471 GMT: [CONFIG] Transformation Catalog Type used YAML TC 2021.11.17 16:23:27.472 GMT: [DEBUG] Ignoring error encountered while loading Transformation Catalog [1]: Unable to instantiate Transformation Catalog at edu.isi.pegasus.planner.catalog.transformation.TransformationFactory.loadInstance(TransformationFactory.java:164) [2]: edu.isi.pegasus.planner.catalog.transformation.impl.YAML caught java.lang.RuntimeException The File to be used as TC should be defined with the property pegasus.catalog.transformation.file at edu.isi.pegasus.planner.catalog.transformation.impl.YAML.connect(YAML.java:167) 2021.11.17 16:23:27.472 GMT: [DEBUG] Created a temporary transformation catalog backend /tmp/tc.2605403248900208819.txt 2021.11.17 16:23:27.473 GMT: [CONFIG] Transformation Catalog Type used Multiline Textual TC 2021.11.17 16:23:27.474 GMT: [CONFIG] Transformation Catalog File used /tmp/tc.2605403248900208819.txt 2021.11.17 16:23:27.478 GMT: [CONFIG] Data Configuration used for the workflow condorio 2021.11.17 16:23:27.480 GMT: [DEBUG] Directory to be created is /local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/yifan.wang/pegasus/190425.dax/run0001 2021.11.17 16:23:27.481 GMT: [CONFIG] Metrics file will be written out to /local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/190425.dax-0.metrics 2021.11.17 16:23:27.481 GMT: [CONFIG] The base submit directory for the workflow /local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb 2021.11.17 16:23:27.481 GMT: [CONFIG] The relative submit directory for the workflow work 2021.11.17 16:23:27.481 GMT: [CONFIG] The relative execution directory for the workflow work 2021.11.17 16:23:27.484 GMT: [INFO] event.pegasus.stampede.events dax.id 190425.dax-0 - STARTED 2021.11.17 16:23:27.489 GMT: [DEBUG] Written out stampede events for the abstract workflow to /local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/190425.dax-0.static.bp 2021.11.17 16:23:27.490 GMT: [INFO] event.pegasus.stampede.events dax.id 190425.dax-0 (0.006 seconds) - FINISHED 2021.11.17 16:23:27.491 GMT: [INFO] event.pegasus.refinement dax.id 190425.dax-0 - STARTED 2021.11.17 16:23:27.498 GMT: [CONFIG] Proxy used for Replica Catalog is /tmp/x509up_u44039 2021.11.17 16:23:27.501 GMT: [DEBUG] [Replica Factory] Connect properties detected {proxy=/tmp/x509up_u44039, read.only=true, dax.asrc=true, cache.asrc=true} 2021.11.17 16:23:27.502 GMT: [DEBUG] [Replica Factory] Connect properties detected for implementor edu.isi.pegasus.planner.catalog.replica.impl.YAML -> {proxy=/tmp/x509up_u44039, read.only=true, dax.asrc=true, cache.asrc=true} 2021.11.17 16:23:27.504 GMT: [DEBUG] Problem while connecting with the Replica Catalog: Unable to connect to replica catalog implementation edu.isi.pegasus.planner.catalog.replica.impl.YAML with props {proxy=/tmp/x509up_u44039, read.only=true, dax.asrc=true, cache.asrc=true} 2021.11.17 16:23:27.504 GMT: [DEBUG] Setting property dagman.registration.maxjobs to 1 to set max jobs for registrations jobs category 2021.11.17 16:23:27.508 GMT: [DEBUG] Copied /tmp/tc.2605403248900208819.txt to directory /local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/catalogs 2021.11.17 16:23:27.510 GMT: [DEBUG] Copied /work/yifan.wang/4ogc/prod190425/190425_output/sites.yml to directory /local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/catalogs 2021.11.17 16:23:27.510 GMT: [DEBUG] Set Default output replica catalog properties to {pegasus.catalog.replica.output.db.driver=sqlite, pegasus.catalog.replica.output.db.url=jdbc:sqlite:/local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/190425.dax-0.replicas.db, pegasus.catalog.replica.output=JDBCRC} 2021.11.17 16:23:27.511 GMT: [INFO] event.pegasus.check.cyclic-dependencies dax.id 190425.dax-0 - STARTED 2021.11.17 16:23:27.511 GMT: [INFO] event.pegasus.check.cyclic-dependencies dax.id 190425.dax-0 (0.0 seconds) - FINISHED 2021.11.17 16:23:27.512 GMT: [DEBUG] 0 entries found in cache of total 4 2021.11.17 16:23:27.513 GMT: [DEBUG] 0 entries found in previous submit dirs of total 4 2021.11.17 16:23:27.513 GMT: [DEBUG] 0 entries found in input directories of total 4 2021.11.17 16:23:27.513 GMT: [DEBUG] 4 entries found in abstract workflow replica store of total 4 2021.11.17 16:23:27.513 GMT: [DEBUG] 0 entries found in inherited replica store of total 4 2021.11.17 16:23:27.513 GMT: [DEBUG] 0 entries found in input replica catalog of total 4 2021.11.17 16:23:27.514 GMT: [DEBUG] 4 entries found in all replica sources of total 4 2021.11.17 16:23:27.514 GMT: [CONFIG] Data Reuse Scope for the workflow: full 2021.11.17 16:23:27.514 GMT: [DEBUG] Reducing the workflow 2021.11.17 16:23:27.514 GMT: [INFO] event.pegasus.reduce dax.id 190425.dax-0 - STARTED 2021.11.17 16:23:27.515 GMT: [DEBUG] Jobs whose o/p files already exist 2021.11.17 16:23:27.515 GMT: [DEBUG] Job pegasus-plan_finalization has no o/p files 2021.11.17 16:23:27.515 GMT: [DEBUG] Job pegasus-plan_main has no o/p files 2021.11.17 16:23:27.515 GMT: [DEBUG] Jobs whose o/p files already exist - DONE 2021.11.17 16:23:27.516 GMT: [DEBUG] pegasus-plan_main will not be deleted as not as child pegasus-plan_finalization is not marked for deletion 2021.11.17 16:23:27.517 GMT: [INFO] Nodes/Jobs Deleted from the Workflow during reduction 2021.11.17 16:23:27.517 GMT: [INFO] Nodes/Jobs Deleted from the Workflow during reduction - DONE 2021.11.17 16:23:27.517 GMT: [INFO] event.pegasus.reduce dax.id 190425.dax-0 (0.003 seconds) - FINISHED 2021.11.17 16:23:27.517 GMT: [INFO] event.pegasus.siteselection dax.id 190425.dax-0 - STARTED 2021.11.17 16:23:27.531 GMT: [DEBUG] List of executions sites is [condorpool_shared, local] 2021.11.17 16:23:27.534 GMT: [DEBUG] Job pegasus-plan_main will be mapped based on selector|hints profile key execution.site 2021.11.17 16:23:27.535 GMT: [DEBUG] Job pegasus-plan_finalization will be mapped based on selector|hints profile key execution.site 2021.11.17 16:23:27.535 GMT: [DEBUG] Setting up site mapping for job pegasus-plan_finalization 2021.11.17 16:23:27.535 GMT: [DEBUG] Job was mapped to pegasus-plan_finalization to site local 2021.11.17 16:23:27.537 GMT: [DEBUG] Setting up site mapping for job pegasus-plan_main 2021.11.17 16:23:27.539 GMT: [DEBUG] Job was mapped to pegasus-plan_main to site local 2021.11.17 16:23:27.540 GMT: [INFO] event.pegasus.stampede.events dax.id 190425.dax-0 - STARTED 2021.11.17 16:23:27.541 GMT: [DEBUG] Written out stampede metadata events for the mapped workflow to /local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/190425.dax-0.static.bp 2021.11.17 16:23:27.541 GMT: [INFO] event.pegasus.stampede.events dax.id 190425.dax-0 (0.001 seconds) - FINISHED 2021.11.17 16:23:27.541 GMT: [INFO] event.pegasus.siteselection dax.id 190425.dax-0 (0.024 seconds) - FINISHED 2021.11.17 16:23:27.545 GMT: [DEBUG] User set mapper is not a stageable mapper. Loading a stageable mapper 2021.11.17 16:23:27.547 GMT: [DEBUG] Deployment of Worker Package needed 2021.11.17 16:23:27.564 GMT: [CONFIG] No Replica Registration Jobs will be created . 2021.11.17 16:23:27.568 GMT: [CONFIG] Transfer Implementation loaded for Stage-In [Python based Transfer Script] 2021.11.17 16:23:27.569 GMT: [CONFIG] Transfer Implementation loaded for symbolic linking Stage-In [Python based Transfer Script] 2021.11.17 16:23:27.569 GMT: [CONFIG] Transfer Implementation loaded for Inter Site [Python based Transfer Script] 2021.11.17 16:23:27.569 GMT: [CONFIG] Transfer Implementation loaded for Stage-Out [Python based Transfer Script] 2021.11.17 16:23:27.570 GMT: [DEBUG] Trying to get TCEntries for pegasus::worker on resource ALL of type STAGEABLE 2021.11.17 16:23:27.571 GMT: [DEBUG] System information for pegasus-worker-5.0.1-x86_64_deb_10.tar.gz is {arch=x86_64 os=linux osrelease=deb osversion=10} 2021.11.17 16:23:27.571 GMT: [DEBUG] Compute site sysinfo local {arch=x86_64 os=linux} 2021.11.17 16:23:27.571 GMT: [DEBUG] Worker Package Entry used for site local Logical Namespace : pegasus Logical Name : worker Version : null Resource Id : local Physical Name : file:///local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/pegasus-worker-5.0.1-x86_64_deb_10.tar.gz SysInfo : {arch=x86_64 os=linux} TYPE : STAGEABLE BYPASS : false Notifications: Container : null Compound Tx : null 2021.11.17 16:23:27.572 GMT: [DEBUG] Trying to get TCEntries for pegasus::worker on resource local of type STAGEABLE 2021.11.17 16:23:27.572 GMT: [DEBUG] Staging site for site local for worker package deployment - local 2021.11.17 16:23:27.572 GMT: [DEBUG] Trying to get TCEntries for pegasus::worker on resource ALL of type STAGEABLE 2021.11.17 16:23:27.573 GMT: [DEBUG] Selected entry Logical Namespace : pegasus Logical Name : worker Version : null Resource Id : local Physical Name : file:///local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/pegasus-worker-5.0.1-x86_64_deb_10.tar.gz SysInfo : {arch=x86_64 os=linux} TYPE : STAGEABLE BYPASS : false Notifications: Container : null Compound Tx : null 2021.11.17 16:23:27.573 GMT: [DEBUG] Creating a default TC entry for pegasus::transfer at site local 2021.11.17 16:23:27.574 GMT: [DEBUG] Remote Path set is pegasus-transfer 2021.11.17 16:23:27.574 GMT: [DEBUG] Trying to get TCEntries for pegasus::transfer on resource local of type INSTALLED 2021.11.17 16:23:27.574 GMT: [DEBUG] Entry constructed Logical Namespace : pegasus Logical Name : transfer Version : null Resource Id : local Physical Name : pegasus-transfer SysInfo : {arch=x86_64 os=linux} TYPE : INSTALLED BYPASS : false Notifications: Container : null Compound Tx : null 2021.11.17 16:23:27.575 GMT: [DEBUG] Creating a default TC entry for pegasus::kickstart at site local 2021.11.17 16:23:27.575 GMT: [DEBUG] Remote Path set is pegasus-kickstart 2021.11.17 16:23:27.575 GMT: [DEBUG] Trying to get TCEntries for pegasus::kickstart on resource local of type INSTALLED 2021.11.17 16:23:27.578 GMT: [DEBUG] Entry constructed Logical Namespace : pegasus Logical Name : kickstart Version : null Resource Id : local Physical Name : pegasus-kickstart SysInfo : {arch=x86_64 os=linux} TYPE : INSTALLED BYPASS : false Notifications: Container : null Compound Tx : null 2021.11.17 16:23:27.578 GMT: [DEBUG] Creating a default TC entry for pegasus::cleanup at site local 2021.11.17 16:23:27.578 GMT: [DEBUG] Remote Path set is pegasus-transfer 2021.11.17 16:23:27.578 GMT: [DEBUG] Trying to get TCEntries for pegasus::cleanup on resource local of type INSTALLED 2021.11.17 16:23:27.579 GMT: [DEBUG] Entry constructed Logical Namespace : pegasus Logical Name : cleanup Version : null Resource Id : local Physical Name : pegasus-transfer SysInfo : {arch=x86_64 os=linux} TYPE : INSTALLED BYPASS : false Notifications: Container : null Compound Tx : null 2021.11.17 16:23:27.579 GMT: [DEBUG] Creating a default TC entry for pegasus::seqexec at site local 2021.11.17 16:23:27.579 GMT: [DEBUG] Remote Path set is pegasus-cluster 2021.11.17 16:23:27.579 GMT: [DEBUG] Trying to get TCEntries for pegasus::seqexec on resource local of type INSTALLED 2021.11.17 16:23:27.580 GMT: [DEBUG] Entry constructed Logical Namespace : pegasus Logical Name : seqexec Version : null Resource Id : local Physical Name : pegasus-cluster SysInfo : {arch=x86_64 os=linux} TYPE : INSTALLED BYPASS : false Notifications: Container : null Compound Tx : null 2021.11.17 16:23:27.580 GMT: [DEBUG] Creating a default TC entry for pegasus::dirmanager at site local 2021.11.17 16:23:27.580 GMT: [DEBUG] Remote Path set is pegasus-transfer 2021.11.17 16:23:27.580 GMT: [DEBUG] Trying to get TCEntries for pegasus::dirmanager on resource local of type INSTALLED 2021.11.17 16:23:27.581 GMT: [DEBUG] Entry constructed Logical Namespace : pegasus Logical Name : dirmanager Version : null Resource Id : local Physical Name : pegasus-transfer SysInfo : {arch=x86_64 os=linux} TYPE : INSTALLED BYPASS : false Notifications: Container : null Compound Tx : null 2021.11.17 16:23:27.581 GMT: [DEBUG] Creating a default TC entry for pegasus::keg at site local 2021.11.17 16:23:27.581 GMT: [DEBUG] Remote Path set is pegasus-keg 2021.11.17 16:23:27.581 GMT: [DEBUG] Trying to get TCEntries for pegasus::keg on resource local of type INSTALLED 2021.11.17 16:23:27.582 GMT: [DEBUG] Entry constructed Logical Namespace : pegasus Logical Name : keg Version : null Resource Id : local Physical Name : pegasus-keg SysInfo : {arch=x86_64 os=linux} TYPE : INSTALLED BYPASS : false Notifications: Container : null Compound Tx : null 2021.11.17 16:23:27.582 GMT: [INFO] event.pegasus.cluster dax.id 190425.dax-0 - STARTED 2021.11.17 16:23:27.585 GMT: [DEBUG] Adding job to graph pegasus-plan_finalization 2021.11.17 16:23:27.585 GMT: [DEBUG] Adding job to graph pegasus-plan_main 2021.11.17 16:23:27.585 GMT: [DEBUG] Adding parents for child finalization 2021.11.17 16:23:27.587 GMT: [CONFIG] Partitioner loaded is Label Based Partitioning 2021.11.17 16:23:27.597 GMT: [CONFIG] Kickstart Stating Disabled Completely - false 2021.11.17 16:23:27.599 GMT: [CONFIG] Kickstart Stating Disabled Completely - false 2021.11.17 16:23:27.599 GMT: [CONFIG] Clusterer loaded is Topological based Vertical Clustering 2021.11.17 16:23:27.600 GMT: [INFO] Starting Graph Traversal 2021.11.17 16:23:27.601 GMT: [DEBUG] Adding to level 0 dummy 2021.11.17 16:23:27.601 GMT: [DEBUG] Adding to queue main 2021.11.17 16:23:27.601 GMT: [DEBUG] Removed dummy 2021.11.17 16:23:27.601 GMT: [DEBUG] Adding to level 1 main 2021.11.17 16:23:27.602 GMT: [DEBUG] Adding to queue finalization 2021.11.17 16:23:27.602 GMT: [DEBUG] Removed main 2021.11.17 16:23:27.602 GMT: [DEBUG] Adding to level 2 finalization 2021.11.17 16:23:27.602 GMT: [DEBUG] Removed finalization 2021.11.17 16:23:27.602 GMT: [INFO] Starting Graph Traversal - DONE 2021.11.17 16:23:27.603 GMT: [DEBUG] Partition is [finalization] corresponding to label finalization 2021.11.17 16:23:27.603 GMT: [DEBUG] Clustering jobs in partition ID2 [finalization] 2021.11.17 16:23:27.604 GMT: [DEBUG] No clustering for partition ID2 2021.11.17 16:23:27.604 GMT: [DEBUG] Partition is [main] corresponding to label main 2021.11.17 16:23:27.604 GMT: [DEBUG] Clustering jobs in partition ID1 [main] 2021.11.17 16:23:27.604 GMT: [DEBUG] No clustering for partition ID1 2021.11.17 16:23:27.604 GMT: [INFO] Determining relations between partitions 2021.11.17 16:23:27.605 GMT: [INFO] Determining relations between partitions - DONE 2021.11.17 16:23:27.605 GMT: [DEBUG] Adding job to graph pegasus-plan_finalization 2021.11.17 16:23:27.605 GMT: [DEBUG] Adding job to graph pegasus-plan_main 2021.11.17 16:23:27.606 GMT: [DEBUG] Adding parents for child finalization 2021.11.17 16:23:27.606 GMT: [CONFIG] Partitioner loaded is Level Based Partitioning 2021.11.17 16:23:27.608 GMT: [CONFIG] Kickstart Stating Disabled Completely - false 2021.11.17 16:23:27.609 GMT: [CONFIG] Kickstart Stating Disabled Completely - false 2021.11.17 16:23:27.609 GMT: [CONFIG] Clusterer loaded is Horizontal Clustering 2021.11.17 16:23:27.610 GMT: [DEBUG] Adding to level 0 dummy 2021.11.17 16:23:27.610 GMT: [DEBUG] Adding to queue main 2021.11.17 16:23:27.610 GMT: [DEBUG] Removed dummy 2021.11.17 16:23:27.610 GMT: [DEBUG] Adding to level 1 main 2021.11.17 16:23:27.610 GMT: [DEBUG] Adding to queue finalization 2021.11.17 16:23:27.610 GMT: [DEBUG] Removed main 2021.11.17 16:23:27.611 GMT: [DEBUG] Partition ID1 is :[main] 2021.11.17 16:23:27.611 GMT: [DEBUG] Clustering jobs in partition ID1 [main] 2021.11.17 16:23:27.612 GMT: [DEBUG] Clustering jobs of type pegasus-pegasus-plan-5_0_1 2021.11.17 16:23:27.612 GMT: [DEBUG] No clustering of jobs mapped to execution site local 2021.11.17 16:23:27.612 GMT: [DEBUG] Adding to level 2 finalization 2021.11.17 16:23:27.612 GMT: [DEBUG] Removed finalization 2021.11.17 16:23:27.612 GMT: [DEBUG] Partition ID2 is :[finalization] 2021.11.17 16:23:27.613 GMT: [DEBUG] Clustering jobs in partition ID2 [finalization] 2021.11.17 16:23:27.613 GMT: [DEBUG] Clustering jobs of type pegasus-pegasus-plan-5_0_1 2021.11.17 16:23:27.613 GMT: [DEBUG] No clustering of jobs mapped to execution site local 2021.11.17 16:23:27.613 GMT: [DEBUG] Replacing {pegasus-plan_main [] -> pegasus-plan_finalization [],false} with {pegasus-plan_main [] -> pegasus-plan_finalization [],false}Add to set : true 2021.11.17 16:23:27.613 GMT: [DEBUG] All clustered jobs removed from the workflow 2021.11.17 16:23:27.614 GMT: [INFO] event.pegasus.cluster dax.id 190425.dax-0 (0.032 seconds) - FINISHED 2021.11.17 16:23:27.615 GMT: [DEBUG] Initialising Replica Catalog for Planner Cache 2021.11.17 16:23:27.615 GMT: [DEBUG] [Replica Factory] Connect properties detected for implementor SimpleFile -> {output=JDBCRC, output.db.create=true, file=/local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/190425.dax-0.getcache, read.only=true, dax.asrc=true, output.db.url=jdbc:sqlite:/local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/190425.dax-0.replicas.db, output.db.driver=sqlite, cache.asrc=true} 2021.11.17 16:23:27.616 GMT: [DEBUG] Initialising Replica Catalog for Planner Cache 2021.11.17 16:23:27.617 GMT: [DEBUG] [Replica Factory] Connect properties detected for implementor SimpleFile -> {output=JDBCRC, output.db.create=true, file=/local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/190425.dax-0.putcache, read.only=true, dax.asrc=true, output.db.url=jdbc:sqlite:/local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/190425.dax-0.replicas.db, output.db.driver=sqlite, cache.asrc=true} 2021.11.17 16:23:27.617 GMT: [INFO] Grafting transfer nodes in the workflow 2021.11.17 16:23:27.617 GMT: [INFO] event.pegasus.generate.transfer-nodes dax.id 190425.dax-0 - STARTED 2021.11.17 16:23:27.619 GMT: [DEBUG] Date Reuse Engine no longer tracks deleted leaf jobs. Returning empty list 2021.11.17 16:23:27.625 GMT: [CONFIG] No Replica Registration Jobs will be created . 2021.11.17 16:23:27.626 GMT: [DEBUG] Number of transfer jobs for -1 are 0 2021.11.17 16:23:27.626 GMT: [DEBUG] Number of transfer jobs for 0 are 1 2021.11.17 16:23:27.626 GMT: [DEBUG] Number of transfer jobs for 1 are 1 2021.11.17 16:23:27.628 GMT: [CONFIG] Transfer Implementation loaded for Stage-In [Python based Transfer Script] 2021.11.17 16:23:27.628 GMT: [CONFIG] Transfer Implementation loaded for symbolic linking Stage-In [Python based Transfer Script] 2021.11.17 16:23:27.628 GMT: [CONFIG] Transfer Implementation loaded for Inter Site [Python based Transfer Script] 2021.11.17 16:23:27.628 GMT: [CONFIG] Transfer Implementation loaded for Stage-Out [Python based Transfer Script] 2021.11.17 16:23:27.631 GMT: [DEBUG] Rank ( rank => 1 priority => 500 expr => file://(?!.*(cvmfs)).*) 2021.11.17 16:23:27.631 GMT: [DEBUG] Rank ( rank => 2 priority => 400 expr => file:///cvmfs/.*) 2021.11.17 16:23:27.631 GMT: [DEBUG] Rank ( rank => 3 priority => 300 expr => root://.*) 2021.11.17 16:23:27.631 GMT: [DEBUG] Rank ( rank => 4 priority => 200 expr => gsiftp://red-gridftp.unl.edu.*) 2021.11.17 16:23:27.632 GMT: [DEBUG] Rank ( rank => 5 priority => 100 expr => gridftp://.*) 2021.11.17 16:23:27.632 GMT: [DEBUG] Rank ( rank => 6 priority => 0 expr => .*) 2021.11.17 16:23:27.632 GMT: [CONFIG] [RegexReplicaSelector] User Provided Ranked regexes are [( rank => 1 priority => 500 expr => file://(?!.*(cvmfs)).*), ( rank => 2 priority => 400 expr => file:///cvmfs/.*), ( rank => 3 priority => 300 expr => root://.*), ( rank => 4 priority => 200 expr => gsiftp://red-gridftp.unl.edu.*), ( rank => 5 priority => 100 expr => gridftp://.*), ( rank => 6 priority => 0 expr => .*)] 2021.11.17 16:23:27.635 GMT: [DEBUG] [Replica Factory] Connect properties detected for implementor File -> {file=output.map, read.only=true} 2021.11.17 16:23:27.637 GMT: [CONFIG] Output Mapper loaded is [Replica Catalog Mapper] 2021.11.17 16:23:27.637 GMT: [DEBUG] Initialising Workflow Cache File in the Submit Directory 2021.11.17 16:23:27.637 GMT: [DEBUG] [Replica Factory] Connect properties detected for implementor FlushedCache -> {output=JDBCRC, output.db.create=true, file=/local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/190425.dax-0.cache, dax.asrc=true, output.db.url=jdbc:sqlite:/local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/190425.dax-0.replicas.db, output.db.driver=sqlite, cache.asrc=true} 2021.11.17 16:23:27.638 GMT: [CONFIG] Transfer Refiner loaded is [Balanced Cluster Transfer Refiner( round robin distribution at file level)] 2021.11.17 16:23:27.639 GMT: [CONFIG] ReplicaSelector loaded is [Regex] 2021.11.17 16:23:27.639 GMT: [CONFIG] Submit Directory Mapper loaded is [Relative Submit Directory Mapper] 2021.11.17 16:23:27.639 GMT: [CONFIG] Staging Mapper loaded is [Flat Directory Staging Mapper] 2021.11.17 16:23:27.641 GMT: [DEBUG] SRM Server map is {} 2021.11.17 16:23:27.642 GMT: [DEBUG] SRM Server map is {} 2021.11.17 16:23:27.642 GMT: [DEBUG] Directory for job pegasus-plan_main is . 2021.11.17 16:23:27.642 GMT: [DEBUG] 2021.11.17 16:23:27.642 GMT: [DEBUG] Job being traversed is pegasus-plan_main 2021.11.17 16:23:27.642 GMT: [DEBUG] To be run at local 2021.11.17 16:23:27.643 GMT: [DEBUG] Parents of job:{} 2021.11.17 16:23:27.643 GMT: [DEBUG] Initialising Workflow Cache File for job pegasus-plan_main 2021.11.17 16:23:27.643 GMT: [DEBUG] [Replica Factory] Connect properties detected for implementor FlushedCache -> {output=JDBCRC, output.db.create=true, file=/local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/./pegasus-plan_main.cache, dax.asrc=true, output.db.url=jdbc:sqlite:/local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/190425.dax-0.replicas.db, output.db.driver=sqlite, cache.asrc=true} 2021.11.17 16:23:27.644 GMT: [DEBUG] [RegexReplicaSelector] Selecting a pfn for lfn main.dax at site local amongst main.dax regex false -> {(/work/yifan.wang/4ogc/prod190425/190425_output/main.dax,{site=local}),} 2021.11.17 16:23:27.644 GMT: [DEBUG] Job Input files : Removed file main.dax for job pegasus-plan_main 2021.11.17 16:23:27.644 GMT: [DEBUG] Job Search Files : Removed file main.dax for job pegasus-plan_main 2021.11.17 16:23:27.645 GMT: [DEBUG] Set arguments for DAX job pegasus-plan_main to -Dpegasus.dir.storage.mapper.replica.file=main.map --basename main --cluster label,horizontal --output-sites local --staging-site local=local,condorpool_shared=condorpool_shared --cleanup inplace -vvv /work/yifan.wang/4ogc/prod190425/190425_output/main.dax 2021.11.17 16:23:27.647 GMT: [DEBUG] Directory for job pegasus-plan_finalization is . 2021.11.17 16:23:27.647 GMT: [DEBUG] 2021.11.17 16:23:27.647 GMT: [DEBUG] Job being traversed is pegasus-plan_finalization 2021.11.17 16:23:27.647 GMT: [DEBUG] To be run at local 2021.11.17 16:23:27.647 GMT: [DEBUG] Parents of job:{pegasus-plan_main,} 2021.11.17 16:23:27.648 GMT: [DEBUG] Initialising Workflow Cache File for job pegasus-plan_finalization 2021.11.17 16:23:27.648 GMT: [DEBUG] [Replica Factory] Connect properties detected for implementor FlushedCache -> {output=JDBCRC, output.db.create=true, file=/local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/./pegasus-plan_finalization.cache, dax.asrc=true, output.db.url=jdbc:sqlite:/local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/190425.dax-0.replicas.db, output.db.driver=sqlite, cache.asrc=true} 2021.11.17 16:23:27.649 GMT: [DEBUG] [RegexReplicaSelector] Selecting a pfn for lfn finalization.dax at site local amongst finalization.dax regex false -> {(/work/yifan.wang/4ogc/prod190425/190425_output/finalization.dax,{site=local}),} 2021.11.17 16:23:27.649 GMT: [DEBUG] Job Input files : Removed file finalization.dax for job pegasus-plan_finalization 2021.11.17 16:23:27.649 GMT: [DEBUG] Job Search Files : Removed file finalization.dax for job pegasus-plan_finalization 2021.11.17 16:23:27.650 GMT: [DEBUG] Set arguments for DAX job pegasus-plan_finalization to -Dpegasus.dir.storage.mapper.replica.file=finalization.map --basename finalization --cluster label,horizontal --output-sites local --staging-site local=local,condorpool_shared=condorpool_shared --cleanup inplace -vvv /work/yifan.wang/4ogc/prod190425/190425_output/finalization.dax 2021.11.17 16:23:27.651 GMT: [INFO] event.pegasus.generate.transfer-nodes dax.id 190425.dax-0 (0.034 seconds) - FINISHED 2021.11.17 16:23:27.652 GMT: [DEBUG] Adding worker package deployment node for local 2021.11.17 16:23:27.653 GMT: [DEBUG] Skipping stage worker job for site local as worker package already in submit directory file:///local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/pegasus-worker-5.0.1-x86_64_deb_10.tar.gz 2021.11.17 16:23:27.653 GMT: [INFO] event.pegasus.generate.workdir-nodes dax.id 190425.dax-0 - STARTED 2021.11.17 16:23:27.656 GMT: [DEBUG] Trying to get TCEntries for pegasus::dirmanager on resource local of type INSTALLED 2021.11.17 16:23:27.660 GMT: [DEBUG] Creating create dir node create_dir_190425.dax_0_local 2021.11.17 16:23:27.661 GMT: [DEBUG] Need to add edge create_dir_190425.dax_0_local -> pegasus-plan_main 2021.11.17 16:23:27.661 GMT: [DEBUG] Adding node to the worfklow create_dir_190425.dax_0_local 2021.11.17 16:23:27.661 GMT: [INFO] event.pegasus.generate.workdir-nodes dax.id 190425.dax-0 (0.008 seconds) - FINISHED 2021.11.17 16:23:27.661 GMT: [INFO] event.pegasus.generate.cleanup-nodes dax.id 190425.dax-0 - STARTED 2021.11.17 16:23:27.665 GMT: [CONFIG] Setting property dagman.cleanup.maxjobs to 4 to set max jobs for cleanup jobs category 2021.11.17 16:23:27.665 GMT: [DEBUG] Number of sites 1 2021.11.17 16:23:27.665 GMT: [DEBUG] Site local count jobs = 3 2021.11.17 16:23:27.665 GMT: [DEBUG] * create_dir_190425.dax_0_local 2021.11.17 16:23:27.665 GMT: [DEBUG] * pegasus-plan_finalization 2021.11.17 16:23:27.665 GMT: [DEBUG] * pegasus-plan_main 2021.11.17 16:23:27.665 GMT: [DEBUG] local 3 2021.11.17 16:23:27.665 GMT: [DEBUG] Leaf jobs scheduled at site local are create_dir_190425.dax_0_local,pegasus-plan_finalization,pegasus-plan_main, 2021.11.17 16:23:27.666 GMT: [DEBUG] File finalization.map will not be cleaned up for job pegasus-plan_finalization 2021.11.17 16:23:27.666 GMT: [DEBUG] File main.map will not be cleaned up for job pegasus-plan_main 2021.11.17 16:23:27.666 GMT: [DEBUG] 2021.11.17 16:23:27.666 GMT: [INFO] For site: local number of files cleaned up - 0 2021.11.17 16:23:27.666 GMT: [DEBUG] CLEANUP LIST 2021.11.17 16:23:27.666 GMT: [INFO] event.pegasus.generate.cleanup-nodes dax.id 190425.dax-0 (0.005 seconds) - FINISHED 2021.11.17 16:23:27.666 GMT: [INFO] Adding Leaf Cleanup Jobs dax.id 190425.dax-0 - STARTED 2021.11.17 16:23:27.668 GMT: [DEBUG] Directory URL is a file url for site local [file:///work/yifan.wang/4ogc/prod190425/190425_output/local-site-scratch/work] 2021.11.17 16:23:27.668 GMT: [DEBUG] Trying to get TCEntries for pegasus::cleanup on resource local of type INSTALLED 2021.11.17 16:23:27.669 GMT: [DEBUG] Creating remove directory node cleanup_190425.dax_0_local 2021.11.17 16:23:27.669 GMT: [DEBUG] Need to add edge for DAX|DAG job pegasus-plan_finalization -> cleanup_190425.dax_0_local 2021.11.17 16:23:27.669 GMT: [DEBUG] Need to add edge pegasus-plan_finalization -> cleanup_190425.dax_0_local 2021.11.17 16:23:27.669 GMT: [DEBUG] Need to add edge for DAX|DAG job pegasus-plan_main -> cleanup_190425.dax_0_local 2021.11.17 16:23:27.669 GMT: [DEBUG] Adding node to the worklfow cleanup_190425.dax_0_local 2021.11.17 16:23:27.669 GMT: [INFO] Adding Leaf Cleanup Jobs dax.id 190425.dax-0 (0.003 seconds) - FINISHED 2021.11.17 16:23:27.675 GMT: [INFO] event.pegasus.refinement dax.id 190425.dax-0 (0.184 seconds) - FINISHED 2021.11.17 16:23:27.704 GMT: [DEBUG] Condor Version as string 8.8.9 2021.11.17 16:23:27.705 GMT: [DEBUG] Condor Version detected is 80809 2021.11.17 16:23:27.705 GMT: [INFO] Generating codes for the executable workflow 2021.11.17 16:23:27.705 GMT: [INFO] event.pegasus.code.generation dax.id 190425.dax-0 - STARTED 2021.11.17 16:23:27.706 GMT: [CONFIG] Kickstart Stating Disabled Completely - false 2021.11.17 16:23:27.706 GMT: [DEBUG] event.pegasus.code.generation dax.id 190425.dax-0 - STARTED 2021.11.17 16:23:27.732 GMT: [DEBUG] Condor Version as string 8.8.9 2021.11.17 16:23:27.732 GMT: [DEBUG] Condor Version detected is 80809 2021.11.17 16:23:27.733 GMT: [CONFIG] Kickstart Stating Disabled Completely - false 2021.11.17 16:23:27.734 GMT: [DEBUG] Applying priority of 800 to create_dir_190425.dax_0_local 2021.11.17 16:23:27.769 GMT: [DEBUG] Mount Under Scratch Directories [/tmp, /var/tmp] 2021.11.17 16:23:27.770 GMT: [DEBUG] Trying to get TCEntries for pegasus::kickstart on resource local of type INSTALLED 2021.11.17 16:23:27.772 GMT: [DEBUG] Postscript constructed is /software/tools/pegasus/5.0/bin/pegasus-exitcode 2021.11.17 16:23:27.773 GMT: [DEBUG] Unquoted arguments are pegasus-kickstart -n pegasus::dirmanager -N null -i - -R local -L 190425.dax -T 2021-11-17T16:23:22+00:00 pegasus-transfer 2021.11.17 16:23:27.774 GMT: [DEBUG] Quoted arguments are "pegasus-kickstart -n pegasus::dirmanager -N null -i - -R local -L 190425.dax -T 2021-11-17T16:23:22+00:00 pegasus-transfer " 2021.11.17 16:23:27.776 GMT: [DEBUG] Written Submit file : /local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/./create_dir_190425.dax_0_local.sub 2021.11.17 16:23:27.776 GMT: [DEBUG] Applying priority of 10 to pegasus-plan_main 2021.11.17 16:23:27.776 GMT: [DEBUG] Generating code for DAX job pegasus-plan_main 2021.11.17 16:23:27.776 GMT: [DEBUG] Arguments passed to SUBDAX Generator are -Dpegasus.dir.storage.mapper.replica.file=main.map --basename main --cluster label,horizontal --output-sites local --staging-site local=local,condorpool_shared=condorpool_shared --cleanup inplace -vvv /work/yifan.wang/4ogc/prod190425/190425_output/main.dax 2021.11.17 16:23:27.778 GMT: [DEBUG] Retrieving Metadata from the DAX file /work/yifan.wang/4ogc/prod190425/190425_output/main.dax 2021.11.17 16:23:27.788 GMT: [DEBUG] Submit directory in sub dax specified is ./main.dax_main 2021.11.17 16:23:27.788 GMT: [DEBUG] Base Submit directory for inner workflow set to /local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb 2021.11.17 16:23:27.788 GMT: [DEBUG] Relative Submit Directory for inner workflow set to work/././main.dax_main 2021.11.17 16:23:27.788 GMT: [DEBUG] Submit directory for inner workflow set to /local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/././main.dax_main 2021.11.17 16:23:27.788 GMT: [DEBUG] Setting list of execution sites to the same as outer workflow 2021.11.17 16:23:27.788 GMT: [DEBUG] Submit Directory for SUB DAX is /local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/././main.dax_main 2021.11.17 16:23:27.788 GMT: [DEBUG] Relative Execution Directory for SUB DAX is work/./main.dax_main 2021.11.17 16:23:27.789 GMT: [DEBUG] Trying to get TCEntries for pegasus::pegasus-plan on resource local of type INSTALLED 2021.11.17 16:23:27.789 GMT: [DEBUG] Constructing the default path to the pegasus-plan 2021.11.17 16:23:27.790 GMT: [DEBUG] pegasus-plan invocation for job pegasus-plan_main determined to be /software/tools/pegasus/5.0/bin/pegasus-plan -Dpegasus.log.*=/local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/pegasus-plan_main.pre.log -Dpegasus.workflow.root.uuid=f7a6e542-ab94-4590-9072-57fead3bfd40 -Dpegasus.dir.storage.mapper.replica.file=main.map --conf /local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/pegasus.1171845351760897606.properties --dir /local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb --relative-dir work/./main.dax_main --relative-submit-dir work/././main.dax_main --basename main --sites condorpool_shared,local --staging-site condorpool_shared=condorpool_shared,local=local, --cache /local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/./pegasus-plan_main.cache --inherited-rc-files /local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/190425.dax-0.replica.store --cluster label,horizontal --output-sites local --cleanup inplace --verbose --verbose --verbose --deferred /work/yifan.wang/4ogc/prod190425/190425_output/main.dax 2021.11.17 16:23:27.790 GMT: [DEBUG] Basename prefix for the sub workflow is main 2021.11.17 16:23:27.790 GMT: [DEBUG] Cache File for the sub workflow is /local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/././main.dax_main/main.cache 2021.11.17 16:23:27.790 GMT: [DEBUG] Trying to get TCEntries for condor::dagman on resource local of type INSTALLED 2021.11.17 16:23:27.790 GMT: [DEBUG] condor::dagman not catalogued in the Transformation Catalog. Trying to construct from the Site Catalog 2021.11.17 16:23:27.790 GMT: [DEBUG] DAGMan not catalogued in the Transformation Catalog or the Site Catalog. Trying to construct from the environment 2021.11.17 16:23:27.790 GMT: [DEBUG] Constructing path to dagman on basis of env variable CONDOR_LOCATION 2021.11.17 16:23:27.790 GMT: [DEBUG] Number of Resuce retries 999 2021.11.17 16:23:27.790 GMT: [DEBUG] Constructing arguments to dagman in 7.1.0 and later style 2021.11.17 16:23:27.796 GMT: [CONFIG] Kickstart Stating Disabled Completely - false 2021.11.17 16:23:27.800 GMT: [DEBUG] Setting job pegasus-plan_main.pre to run via No container wrapping 2021.11.17 16:23:27.801 GMT: [DEBUG] Trying to get TCEntries for pegasus::kickstart on resource local of type INSTALLED 2021.11.17 16:23:27.801 GMT: [DEBUG] Trying to get TCEntries for pegasus::transfer on resource local of type INSTALLED 2021.11.17 16:23:27.805 GMT: [DEBUG] Unquoted arguments are -p 0 -f -l . -Notification never -Debug 3 -Lockfile main.dag.lock -Dag main.dag -AllowVersionMismatch -AutoRescue 1 -DoRescueFrom 0 -MaxPre 1 2021.11.17 16:23:27.805 GMT: [DEBUG] Quoted arguments are " -p 0 -f -l . -Notification never -Debug 3 -Lockfile main.dag.lock -Dag main.dag -AllowVersionMismatch -AutoRescue 1 -DoRescueFrom 0 -MaxPre 1" 2021.11.17 16:23:27.805 GMT: [DEBUG] Written Submit file : /local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/./pegasus-plan_main.sub 2021.11.17 16:23:27.805 GMT: [DEBUG] Applying priority of 20 to pegasus-plan_finalization 2021.11.17 16:23:27.805 GMT: [DEBUG] Generating code for DAX job pegasus-plan_finalization 2021.11.17 16:23:27.805 GMT: [DEBUG] Arguments passed to SUBDAX Generator are -Dpegasus.dir.storage.mapper.replica.file=finalization.map --basename finalization --cluster label,horizontal --output-sites local --staging-site local=local,condorpool_shared=condorpool_shared --cleanup inplace -vvv /work/yifan.wang/4ogc/prod190425/190425_output/finalization.dax 2021.11.17 16:23:27.807 GMT: [DEBUG] Retrieving Metadata from the DAX file /work/yifan.wang/4ogc/prod190425/190425_output/finalization.dax 2021.11.17 16:23:27.815 GMT: [DEBUG] Submit directory in sub dax specified is ./finalization.dax_finalization 2021.11.17 16:23:27.815 GMT: [DEBUG] Base Submit directory for inner workflow set to /local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb 2021.11.17 16:23:27.815 GMT: [DEBUG] Relative Submit Directory for inner workflow set to work/././finalization.dax_finalization 2021.11.17 16:23:27.815 GMT: [DEBUG] Submit directory for inner workflow set to /local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/././finalization.dax_finalization 2021.11.17 16:23:27.815 GMT: [DEBUG] Setting list of execution sites to the same as outer workflow 2021.11.17 16:23:27.815 GMT: [DEBUG] Parent DAX Jobs Transient RC's are [null] 2021.11.17 16:23:27.815 GMT: [DEBUG] Submit Directory for SUB DAX is /local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/././finalization.dax_finalization 2021.11.17 16:23:27.815 GMT: [DEBUG] Relative Execution Directory for SUB DAX is work/./finalization.dax_finalization 2021.11.17 16:23:27.815 GMT: [DEBUG] Trying to get TCEntries for pegasus::pegasus-plan on resource local of type INSTALLED 2021.11.17 16:23:27.815 GMT: [DEBUG] Constructing the default path to the pegasus-plan 2021.11.17 16:23:27.815 GMT: [DEBUG] pegasus-plan invocation for job pegasus-plan_finalization determined to be /software/tools/pegasus/5.0/bin/pegasus-plan -Dpegasus.log.*=/local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/pegasus-plan_finalization.pre.log -Dpegasus.workflow.root.uuid=f7a6e542-ab94-4590-9072-57fead3bfd40 -Dpegasus.dir.storage.mapper.replica.file=finalization.map --conf /local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/pegasus.1171845351760897606.properties --dir /local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb --relative-dir work/./finalization.dax_finalization --relative-submit-dir work/././finalization.dax_finalization --basename finalization --sites condorpool_shared,local --staging-site condorpool_shared=condorpool_shared,local=local, --cache null,/local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/./pegasus-plan_finalization.cache --inherited-rc-files /local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/190425.dax-0.replica.store --cluster label,horizontal --output-sites local --cleanup inplace --verbose --verbose --verbose --deferred /work/yifan.wang/4ogc/prod190425/190425_output/finalization.dax 2021.11.17 16:23:27.815 GMT: [DEBUG] Basename prefix for the sub workflow is finalization 2021.11.17 16:23:27.815 GMT: [DEBUG] Cache File for the sub workflow is /local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/././finalization.dax_finalization/finalization.cache 2021.11.17 16:23:27.815 GMT: [DEBUG] Trying to get TCEntries for condor::dagman on resource local of type INSTALLED 2021.11.17 16:23:27.815 GMT: [DEBUG] condor::dagman not catalogued in the Transformation Catalog. Trying to construct from the Site Catalog 2021.11.17 16:23:27.816 GMT: [DEBUG] DAGMan not catalogued in the Transformation Catalog or the Site Catalog. Trying to construct from the environment 2021.11.17 16:23:27.816 GMT: [DEBUG] Constructing path to dagman on basis of env variable CONDOR_LOCATION 2021.11.17 16:23:27.816 GMT: [DEBUG] Number of Resuce retries 999 2021.11.17 16:23:27.816 GMT: [DEBUG] Constructing arguments to dagman in 7.1.0 and later style 2021.11.17 16:23:27.816 GMT: [DEBUG] Setting job pegasus-plan_finalization.pre to run via No container wrapping 2021.11.17 16:23:27.816 GMT: [DEBUG] Trying to get TCEntries for pegasus::kickstart on resource local of type INSTALLED 2021.11.17 16:23:27.817 GMT: [DEBUG] Trying to get TCEntries for pegasus::transfer on resource local of type INSTALLED 2021.11.17 16:23:27.817 GMT: [DEBUG] Unquoted arguments are -p 0 -f -l . -Notification never -Debug 3 -Lockfile finalization.dag.lock -Dag finalization.dag -AllowVersionMismatch -AutoRescue 1 -DoRescueFrom 0 -MaxPre 1 2021.11.17 16:23:27.817 GMT: [DEBUG] Quoted arguments are " -p 0 -f -l . -Notification never -Debug 3 -Lockfile finalization.dag.lock -Dag finalization.dag -AllowVersionMismatch -AutoRescue 1 -DoRescueFrom 0 -MaxPre 1" 2021.11.17 16:23:27.817 GMT: [DEBUG] Written Submit file : /local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/./pegasus-plan_finalization.sub 2021.11.17 16:23:27.817 GMT: [DEBUG] Applying priority of 1000 to cleanup_190425.dax_0_local 2021.11.17 16:23:27.818 GMT: [DEBUG] Trying to get TCEntries for pegasus::kickstart on resource local of type INSTALLED 2021.11.17 16:23:27.818 GMT: [DEBUG] Postscript constructed is /software/tools/pegasus/5.0/bin/pegasus-exitcode 2021.11.17 16:23:27.818 GMT: [DEBUG] Unquoted arguments are pegasus-kickstart -n pegasus::cleanup -N null -i - -R local -L 190425.dax -T 2021-11-17T16:23:22+00:00 pegasus-transfer 2021.11.17 16:23:27.818 GMT: [DEBUG] Quoted arguments are "pegasus-kickstart -n pegasus::cleanup -N null -i - -R local -L 190425.dax -T 2021-11-17T16:23:22+00:00 pegasus-transfer " 2021.11.17 16:23:27.819 GMT: [DEBUG] Written Submit file : /local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/./cleanup_190425.dax_0_local.sub 2021.11.17 16:23:27.819 GMT: [DEBUG] event.pegasus.code.generation dax.id 190425.dax-0 (0.113 seconds) - FINISHED 2021.11.17 16:23:27.819 GMT: [DEBUG] Written Dag File : 190425.dax-0.dag.tmp 2021.11.17 16:23:27.819 GMT: [DEBUG] Writing out the DOT file 2021.11.17 16:23:27.828 GMT: [DEBUG] Written out notifications to 190425.dax-0.notify 2021.11.17 16:23:27.828 GMT: [DEBUG] Writing out the DAX Replica Store to file /local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/190425.dax-0.replica.store 2021.11.17 16:23:27.829 GMT: [DEBUG] [Replica Factory] Connect properties detected for implementor SimpleFile -> {output=JDBCRC, output.db.create=true, file=/local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/190425.dax-0.replica.store, dax.asrc=true, output.db.url=jdbc:sqlite:/local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/190425.dax-0.replicas.db, output.db.driver=sqlite, cache.asrc=true} 2021.11.17 16:23:27.829 GMT: [DEBUG] Written out dax replica store to 190425.dax-0.replica.store 2021.11.17 16:23:27.831 GMT: [DEBUG] Written out stampede events for the executable workflow to /local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/190425.dax-0.static.bp 2021.11.17 16:23:27.836 GMT: [DEBUG] Proxy whose DN will be logged in the braindump file /tmp/x509up_u44039 2021.11.17 16:23:27.891 GMT: [DEBUG] Unable to determine GRID DN class org.globus.gsi.gssapi.GlobusGSSException: Defective credential detected [Caused by: proxy not found] 2021.11.17 16:23:27.928 GMT: [DEBUG] Written out braindump to /local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/braindump.yml 2021.11.17 16:23:27.929 GMT: [DEBUG] Renamed temporary dag file to : /local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/190425.dax-0.dag 2021.11.17 16:23:27.931 GMT: [DEBUG] Executing /usr/bin/condor_submit_dag -append executable=/software/tools/pegasus/5.0/bin/pegasus-dagman -no_submit -MaxPre 1 -MaxPost 20 -append +pegasus_wf_uuid="f7a6e542-ab94-4590-9072-57fead3bfd40" -append +pegasus_root_wf_uuid="f7a6e542-ab94-4590-9072-57fead3bfd40" -append +pegasus_wf_name="190425.dax-0" -append +pegasus_wf_time="20211117T162326+0000" -append +pegasus_version="5.0.1" -append +pegasus_job_class=11 -append +pegasus_cluster_size=1 -append +pegasus_site="local" -append +pegasus_execution_sites="condorpool_shared,local" -append +pegasus_wf_xformation="pegasus::dagman" 190425.dax-0.dag with environment = PATH=/software/tools/pegasus/5.0/bin/:/work/yifan.wang/virtualenv/4ogc/bin:/work/yifan.wang/lscsoft/opt/accomlal/bin:/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games;PKG_CONFIG_PATH=/work/yifan.wang/lscsoft/opt/accomlal/lib/pkgconfig:;LAL_DATA_PATH=/atlas/recent/cbc/ROM_data/;TZ=:/etc/localtime;MODULEPATH=/etc/environment-modules/modules:/usr/share/modules/versions:/usr/share/modules/$MODULE_VERSION/modulefiles:/usr/share/modules/modulefiles;PEGASUS_PERL_DIR=/software/tools/pegasus/5.0/lib/pegasus/perl;DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/44039/bus;MAIL=/var/mail/yifan.wang;LD_LIBRARY_PATH=/work/yifan.wang/eccsearch/C:/work/yifan.wang/1-ecc-waveform-PE/IMRPhenomDecc:/work/yifan.wang/lscsoft/opt/accomlal/lib/:/work/yifan.wang/lscsoft/MultiNest/lib:;LOGNAME=yifan.wang;PWD=/work/yifan.wang/4ogc/prod190425/190425_output;PYTHONPATH=/software/tools/pegasus/5.0/lib/python3.7/dist-packages/:/work/yifan.wang/eccsearch/waveform/ihes-teobresum/Python:/work/yifan.wang/eccsearch/eccwaveform:/work/yifan.wang/1-ecc-waveform-PE/IMRPhenomDecc:/work/yifan.wang/lscsoft/src/TaylorF2e:;SHELL=/bin/bash;BASH_ENV=/usr/share/modules/init/bash;LM_LICENSE_FILE=/opt/matlab/default/etc/license.dat;OLDPWD=/work/yifan.wang/4ogc/prod190425;TMPDIR=/local/user/yifan.wang;VIRTUAL_ENV=/work/yifan.wang/virtualenv/4ogc;MODULEPATH_modshare=/etc/environment-modules/modules:1:/usr/share/modules/$MODULE_VERSION/modulefiles:1:/usr/share/modules/modulefiles:1:/usr/share/modules/versions:1;LC_ALL=C;PEGASUS_PYTHON_DIR=/software/tools/pegasus/5.0/lib/python3.7/dist-packages;LC_CTYPE=UTF-8;SHLVL=3;SLACK_BOT_TOKEN=xoxp-1889174914644-1876230893430-1893291262468-e9d8766407c79a32862f209441631a1f;CONDOR_LOCATION=/usr;LOADEDMODULES=;SCRATCH=/local/user/yifan.wang;PEGASUS_SCHEMA_DIR=/software/tools/pegasus/5.0/share/pegasus/schema;JAVA_HOME=/usr/lib/jvm/default-java;TERM=xterm-256color;ENV=/usr/share/modules/init/profile.sh;LANG=en_US.UTF-8;XDG_SESSION_ID=95307;XDG_SESSION_TYPE=tty;PEGASUS_PYTHON_EXTERNALS_DIR=/software/tools/pegasus/5.0/lib/pegasus/externals/python;XDG_SESSION_CLASS=user;_=/software/tools/pegasus/5.0/bin/pegasus-plan;PEGASUS_JAVA_DIR=/software/tools/pegasus/5.0/share/pegasus/java;SSH_TTY=/dev/pts/78;SSH_CLIENT=130.75.117.49 49547 22;USER=yifan.wang;CLASSPATH=/software/tools/pegasus/5.0/share/pegasus/java/accessors.jar:/software/tools/pegasus/5.0/share/pegasus/java/bcprov-jdk15on-150.jar:/software/tools/pegasus/5.0/share/pegasus/java/btf-1.2.jar:/software/tools/pegasus/5.0/share/pegasus/java/commons-lang3-3.4.jar:/software/tools/pegasus/5.0/share/pegasus/java/commons-logging.jar:/software/tools/pegasus/5.0/share/pegasus/java/commons-pool.jar:/software/tools/pegasus/5.0/share/pegasus/java/exist-optional.jar:/software/tools/pegasus/5.0/share/pegasus/java/exist.jar:/software/tools/pegasus/5.0/share/pegasus/java/gram-2.1.0.jar:/software/tools/pegasus/5.0/share/pegasus/java/gridftp-2.1.0.jar:/software/tools/pegasus/5.0/share/pegasus/java/gson-2.2.2.jar:/software/tools/pegasus/5.0/share/pegasus/java/gss-2.1.0.jar:/software/tools/pegasus/5.0/share/pegasus/java/guava-16.0.1.jar:/software/tools/pegasus/5.0/share/pegasus/java/hamcrest-core-1.3.jar:/software/tools/pegasus/5.0/share/pegasus/java/io-2.1.0.jar:/software/tools/pegasus/5.0/share/pegasus/java/jackson-annotations-2.9.10.jar:/software/tools/pegasus/5.0/share/pegasus/java/jackson-core-2.9.10.jar:/software/tools/pegasus/5.0/share/pegasus/java/jackson-coreutils-1.8.jar:/software/tools/pegasus/5.0/share/pegasus/java/jackson-databind-2.9.10.jar:/software/tools/pegasus/5.0/share/pegasus/java/jackson-dataformat-yaml-2.9.10.jar:/software/tools/pegasus/5.0/share/pegasus/java/jakarta-oro.jar:/software/tools/pegasus/5.0/share/pegasus/java/java-getopt-1.0.9.jar:/software/tools/pegasus/5.0/share/pegasus/java/javax.json-1.0.4.jar:/software/tools/pegasus/5.0/share/pegasus/java/jcodings-1.0.46.jar:/software/tools/pegasus/5.0/share/pegasus/java/joda-time-2.3.jar:/software/tools/pegasus/5.0/share/pegasus/java/joni-2.1.31.jar:/software/tools/pegasus/5.0/share/pegasus/java/json-schema-validator-1.0.41.jar:/software/tools/pegasus/5.0/share/pegasus/java/jsse-2.1.0.jar:/software/tools/pegasus/5.0/share/pegasus/java/libphonenumber-6.2.jar:/software/tools/pegasus/5.0/share/pegasus/java/log4j-1.2.17.jar:/software/tools/pegasus/5.0/share/pegasus/java/mailapi-1.4.3.jar:/software/tools/pegasus/5.0/share/pegasus/java/msg-simple-1.1.jar:/software/tools/pegasus/5.0/share/pegasus/java/myproxy-2.1.0.jar:/software/tools/pegasus/5.0/share/pegasus/java/mysql-connector-java-5.1.47.jar:/software/tools/pegasus/5.0/share/pegasus/java/pegasus-aws-batch.jar:/software/tools/pegasus/5.0/share/pegasus/java/pegasus.jar:/software/tools/pegasus/5.0/share/pegasus/java/postgresql-8.1dev-400.jdbc3.jar:/software/tools/pegasus/5.0/share/pegasus/java/resolver.jar:/software/tools/pegasus/5.0/share/pegasus/java/rhino-1.7R4.jar:/software/tools/pegasus/5.0/share/pegasus/java/snakeyaml-1.25.jar:/software/tools/pegasus/5.0/share/pegasus/java/sqlite-jdbc-3.8.11.2.jar:/software/tools/pegasus/5.0/share/pegasus/java/ssl-proxies-2.1.0-patched.jar:/software/tools/pegasus/5.0/share/pegasus/java/super-csv-2.4.0.jar:/software/tools/pegasus/5.0/share/pegasus/java/uri-template-0.9.jar:/software/tools/pegasus/5.0/share/pegasus/java/vdl.jar:/software/tools/pegasus/5.0/share/pegasus/java/xercesImpl.jar:/software/tools/pegasus/5.0/share/pegasus/java/xml-apis-1.4.01.jar:/software/tools/pegasus/5.0/share/pegasus/java/xmlParserAPIs.jar:/software/tools/pegasus/5.0/share/pegasus/java/xmldb.jar:/software/tools/pegasus/5.0/share/pegasus/java/xmlrpc.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/apache-client-2.0.0-preview-2.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/batch-2.0.0-preview-2.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/commons-logging-api-1.1.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/core-2.0.0-preview-2.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/http-client-spi-2.0.0-preview-2.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/httpclient-4.5.2.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/httpcore-4.4.4.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/jackson-annotations-2.8.8.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/jackson-databind-2.8.8.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/jackson-jr-objects-2.9.0.pr4.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/joda-time-2.8.1.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/jopt-simple-5.0.4.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/logs-2.0.0-preview-2.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/metrics-spi-2.0.0-preview-2.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/netty-nio-client-2.0.0-preview-2.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/s3-2.0.0-preview-2.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/slf4j-api-1.7.25.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/slf4j-log4j12-1.7.25.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/thirdparty-logging.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/thirdparty.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/utils-2.0.0-preview-2.jar;C_INCLUDE_PATH=/work/yifan.wang/lscsoft/opt/accomlal/include:;PEGASUS_BIN_DIR=/software/tools/pegasus/5.0/bin;SSH_CONNECTION=130.75.117.49 49547 130.75.116.16 22;MODULESHOME=/usr/share/modules;PEGASUS_CONF_DIR=/software/tools/pegasus/5.0/etc;TMP=/local/user/yifan.wang;PYCBC_WAVEFORM=taylorf2e;PEGASUS_ORIG_CLASSPATH=;MODULES_CMD=/usr/lib/x86_64-linux-gnu/modulecmd.tcl;LIGO_DATAFIND_SERVER=ldr.atlas.local:80;GW_DATAFIND_SERVER=;XDG_RUNTIME_DIR=/run/user/44039;PEGASUS_SHARE_DIR=/software/tools/pegasus/5.0/share/pegasus;HOME=/work/yifan.wang; 2021.11.17 16:23:27.960 GMT: 2021.11.17 16:23:27.967 GMT: ----------------------------------------------------------------------- 2021.11.17 16:23:27.972 GMT: File for submitting this DAG to HTCondor : 190425.dax-0.dag.condor.sub 2021.11.17 16:23:27.978 GMT: Log of DAGMan debugging messages : 190425.dax-0.dag.dagman.out 2021.11.17 16:23:27.983 GMT: Log of HTCondor library output : 190425.dax-0.dag.lib.out 2021.11.17 16:23:27.989 GMT: Log of HTCondor library error messages : 190425.dax-0.dag.lib.err 2021.11.17 16:23:27.994 GMT: Log of the life of condor_dagman itself : 190425.dax-0.dag.dagman.log 2021.11.17 16:23:28.000 GMT: 2021.11.17 16:23:28.005 GMT: -no_submit given, not submitting DAG to HTCondor. You can do this with: 2021.11.17 16:23:28.015 GMT: ----------------------------------------------------------------------- 2021.11.17 16:23:28.035 GMT: [DEBUG] condor_submit_dag exited with status 0 2021.11.17 16:23:28.041 GMT: [DEBUG] Updated environment for dagman is environment = _CONDOR_SCHEDD_ADDRESS_FILE=/local/condor/spool/.schedd_address;_CONDOR_MAX_DAGMAN_LOG=0;_CONDOR_SCHEDD_DAEMON_AD_FILE=/local/condor/spool/.schedd_classad;_CONDOR_DAGMAN_LOG=190425.dax-0.dag.dagman.out;PEGASUS_METRICS=true; 2021.11.17 16:23:28.041 GMT: [INFO] event.pegasus.code.generation dax.id 190425.dax-0 (0.336 seconds) - FINISHED 2021.11.17 16:23:28.043 GMT: [DEBUG] Executing /software/tools/pegasus/5.0/bin/pegasus-db-admin update -t master -c /local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/pegasus.1171845351760897606.properties 2021.11.17 16:23:29.282 GMT: Database version: '5.0.1' (sqlite:////work/yifan.wang/.pegasus/workflow.db) 2021.11.17 16:23:29.377 GMT: [DEBUG] pegasus-db-admin exited with status 0 2021.11.17 16:23:29.378 GMT: [DEBUG] Executing /software/tools/pegasus/5.0/bin/pegasus-db-admin create -Dpegasus.catalog.replica.db.url=jdbc:sqlite:/local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/190425.dax-0.replicas.db -Dpegasus.catalog.replica=JDBCRC -Dpegasus.catalog.replica.db.driver=sqlite -t jdbcrc -c /local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/pegasus.1171845351760897606.properties 2021.11.17 16:23:31.634 GMT: Pegasus database was successfully created. 2021.11.17 16:23:31.642 GMT: Database version: '5.0.1' (sqlite:////local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/190425.dax-0.replicas.db) 2021.11.17 16:23:31.721 GMT: [DEBUG] pegasus-db-admin exited with status 0 2021.11.17 16:23:31.721 GMT: Output replica catalog set to jdbc:sqlite:/local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work/190425.dax-0.replicas.db 2021.11.17 16:23:31.721 GMT: [DEBUG] Executing /software/tools/pegasus/5.0/bin/pegasus-run --nogrid /local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work 2021.11.17 16:23:32.135 GMT: Submitting to condor 190425.dax-0.dag.condor.sub 2021.11.17 16:23:32.386 GMT: 2021.11.17 16:23:32.394 GMT: Your workflow has been started and is running in the base directory: 2021.11.17 16:23:32.399 GMT: 2021.11.17 16:23:32.404 GMT: /local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work 2021.11.17 16:23:32.409 GMT: 2021.11.17 16:23:32.414 GMT: *** To monitor the workflow you can run *** 2021.11.17 16:23:32.419 GMT: 2021.11.17 16:23:32.425 GMT: pegasus-status -l /local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work 2021.11.17 16:23:32.432 GMT: 2021.11.17 16:23:32.437 GMT: *** To remove your workflow run *** 2021.11.17 16:23:32.442 GMT: 2021.11.17 16:23:32.447 GMT: pegasus-remove /local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work 2021.11.17 16:23:32.453 GMT: [DEBUG] Submission of workflow exited with status 0 2021.11.17 16:23:32.458 GMT: [DEBUG] Sending Planner Metrics to [1 of 1] http://metrics.pegasus.isi.edu/metrics 2021.11.17 16:23:33.022 GMT: [DEBUG] Metrics succesfully sent to the server 2021.11.17 16:23:33.023 GMT: Time taken to execute is 6.053 seconds 2021.11.17 16:23:33.023 GMT: [INFO] event.pegasus.planner planner.version 5.0.1 (6.399 seconds) - FINISHED Querying Pegasus database for workflow stored in /local/user/yifan.wang/pycbc-tmp.XCbHb9D0Gb/work This may take up to 120 seconds. Please wait......... Done. Workflow submission completed successfully. The Pegasus dashboard URL for this workflow is: https://condor1.atlas.local/pegasus/u/yifan.wang/r/46/w?wf_uuid=f7a6e542-ab94-4590-9072-57fead3bfd40 Note that it make take a while for the dashboard entry to appear while the workflow is parsed by the dashboard. The delay can be on the order of one hour for very large workflows.