Internal error! Generating concrete workflow 2021.12.02 23:36:44.378 GMT: [WARNING] --dax option is deprecated. The abstract workflow is passed via the last positional argument on the commandline. 2021.12.02 23:36:44.418 GMT: [DEBUG] Property Key pegasus.integrity.checking already set to nosymlink. Will not be set to - none 2021.12.02 23:36:44.429 GMT: [DEBUG] Property Key condor.periodic_remove already set to (JobStatus == 5) && ((CurrentTime - EnteredCurrentStatus) > 43200). Will not be set to - (JobStatus == 5) && ((CurrentTime - EnteredCurrentStatus) > 30) 2021.12.02 23:36:44.430 GMT: [INFO] Planner launched in the following directory /work/yifan.wang/4ogc/mismatch_rerun/191109/rerun_output 2021.12.02 23:36:44.430 GMT: [INFO] Planner invoked with following arguments --conf ./pegasus-properties.conf --dir /local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k --submit --forward nogrid --output-sites local --sites condorpool_shared,local --staging-site condorpool_shared=condorpool_shared,local=local --cluster label,horizontal --cleanup inplace --relative-dir work -vvv --dax rerun.dax 2021.12.02 23:36:44.433 GMT: [CONFIG] Pegasus Properties set by the user 2021.12.02 23:36:44.445 GMT: [CONFIG] pegasus.catalog.replica.cache.asrc=true 2021.12.02 23:36:44.445 GMT: [CONFIG] pegasus.catalog.replica.dax.asrc=true 2021.12.02 23:36:44.446 GMT: [CONFIG] pegasus.catalog.workflow.amqp.url=amqp://friend:donatedata@msgs.pegasus.isi.edu:5672/prod/workflows 2021.12.02 23:36:44.446 GMT: [CONFIG] pegasus.dir.staging.mapper=Flat 2021.12.02 23:36:44.447 GMT: [CONFIG] pegasus.dir.storage.mapper=Replica 2021.12.02 23:36:44.447 GMT: [CONFIG] pegasus.dir.storage.mapper.replica=File 2021.12.02 23:36:44.447 GMT: [CONFIG] pegasus.dir.storage.mapper.replica.file=output.map 2021.12.02 23:36:44.448 GMT: [CONFIG] pegasus.dir.submit.mapper=Named 2021.12.02 23:36:44.452 GMT: [CONFIG] pegasus.file.cleanup.scope=deferred 2021.12.02 23:36:44.452 GMT: [CONFIG] pegasus.home.bindir=/software/tools/pegasus/5.0/bin 2021.12.02 23:36:44.452 GMT: [CONFIG] pegasus.home.schemadir=/software/tools/pegasus/5.0/share/pegasus/schema 2021.12.02 23:36:44.452 GMT: [CONFIG] pegasus.home.sharedstatedir=/software/tools/pegasus/5.0/share/pegasus 2021.12.02 23:36:44.453 GMT: [CONFIG] pegasus.home.sysconfdir=/software/tools/pegasus/5.0/etc 2021.12.02 23:36:44.453 GMT: [CONFIG] pegasus.integrity.checking=nosymlink 2021.12.02 23:36:44.453 GMT: [CONFIG] pegasus.metrics.app=ligo-pycbc 2021.12.02 23:36:44.453 GMT: [CONFIG] pegasus.mode=development 2021.12.02 23:36:44.453 GMT: [CONFIG] pegasus.monitord.encoding=json 2021.12.02 23:36:44.453 GMT: [CONFIG] pegasus.register=False 2021.12.02 23:36:44.454 GMT: [CONFIG] pegasus.selector.replica=Regex 2021.12.02 23:36:44.454 GMT: [CONFIG] pegasus.selector.replica.regex.rank.1=file://(?!.*(cvmfs)).* 2021.12.02 23:36:44.454 GMT: [CONFIG] pegasus.selector.replica.regex.rank.2=file:///cvmfs/.* 2021.12.02 23:36:44.454 GMT: [CONFIG] pegasus.selector.replica.regex.rank.3=root://.* 2021.12.02 23:36:44.455 GMT: [CONFIG] pegasus.selector.replica.regex.rank.4=gsiftp://red-gridftp.unl.edu.* 2021.12.02 23:36:44.455 GMT: [CONFIG] pegasus.selector.replica.regex.rank.5=gridftp://.* 2021.12.02 23:36:44.455 GMT: [CONFIG] pegasus.selector.replica.regex.rank.6=.* 2021.12.02 23:36:44.455 GMT: [CONFIG] pegasus.transfer.bypass.input.staging=true 2021.12.02 23:36:44.457 GMT: [CONFIG] pegasus.transfer.links=true 2021.12.02 23:36:48.390 GMT: [INFO] event.pegasus.add.data-dependencies dax.id rerun.dax-0 - STARTED 2021.12.02 23:36:48.392 GMT: [INFO] event.pegasus.add.data-dependencies dax.id rerun.dax-0 (0.001 seconds) - FINISHED 2021.12.02 23:36:48.966 GMT: [DEBUG] Parsed DAX with following metrics {"compute_tasks":0,"dax_tasks":2,"dag_tasks":0,"total_tasks":2,"deleted_tasks":0,"dax_input_files":4,"dax_inter_files":0,"dax_output_files":0,"dax_total_files":4,"compute_jobs":0,"clustered_jobs":0,"si_tx_jobs":0,"so_tx_jobs":0,"inter_tx_jobs":0,"reg_jobs":0,"cleanup_jobs":0,"create_dir_jobs":0,"dax_jobs":2,"dag_jobs":0,"chmod_jobs":0,"total_jobs":2,"mDAXLabel":"rerun.dax"} 2021.12.02 23:36:48.998 GMT: [CONFIG] Loading site catalog file /work/yifan.wang/4ogc/mismatch_rerun/191109/rerun_output/sites.yml 2021.12.02 23:36:49.017 GMT: [DEBUG] All sites will be loaded from the site catalog 2021.12.02 23:36:49.026 GMT: [DEBUG] event.pegasus.parse.site-catalog site-catalog.id /work/yifan.wang/4ogc/mismatch_rerun/191109/rerun_output/sites.yml - STARTED 2021.12.02 23:36:50.382 GMT: [DEBUG] event.pegasus.parse.site-catalog site-catalog.id /work/yifan.wang/4ogc/mismatch_rerun/191109/rerun_output/sites.yml (1.356 seconds) - FINISHED 2021.12.02 23:36:50.401 GMT: [DEBUG] Sites loaded are [osg, condorpool_shared, condorpool_symlink, condorpool_copy, local] 2021.12.02 23:36:50.421 GMT: [CONFIG] Set environment profile for local site PATH=/software/tools/pegasus/5.0/bin/:/work/yifan.wang/virtualenv/ringdown/bin:/work/yifan.wang/lscsoft/opt/accomlal/bin:/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games 2021.12.02 23:36:50.421 GMT: [CONFIG] Set environment profile for local site PYTHONPATH=/software/tools/pegasus/5.0/lib/python3.7/dist-packages/:/work/yifan.wang/eccsearch/waveform/ihes-teobresum/Python:/work/yifan.wang/eccsearch/eccwaveform:/work/yifan.wang/1-ecc-waveform-PE/IMRPhenomDecc:/work/yifan.wang/lscsoft/src/TaylorF2e: 2021.12.02 23:36:50.422 GMT: [CONFIG] Constructed default site catalog entry for condorpool site condor 2021.12.02 23:36:51.313 GMT: [DEBUG] Mount Under Scratch Directories [/tmp, /var/tmp] 2021.12.02 23:36:51.314 GMT: [DEBUG] Style detected for site osg is class edu.isi.pegasus.planner.code.generator.condor.style.Condor 2021.12.02 23:36:51.314 GMT: [DEBUG] Style detected for site condorpool_shared is class edu.isi.pegasus.planner.code.generator.condor.style.Condor 2021.12.02 23:36:51.314 GMT: [DEBUG] Style detected for site condorpool is class edu.isi.pegasus.planner.code.generator.condor.style.Condor 2021.12.02 23:36:51.314 GMT: [DEBUG] Style detected for site condorpool_symlink is class edu.isi.pegasus.planner.code.generator.condor.style.Condor 2021.12.02 23:36:51.314 GMT: [DEBUG] Style detected for site condorpool_copy is class edu.isi.pegasus.planner.code.generator.condor.style.Condor 2021.12.02 23:36:51.315 GMT: [DEBUG] Style detected for site local is class edu.isi.pegasus.planner.code.generator.condor.style.Condor 2021.12.02 23:36:51.315 GMT: [DEBUG] Execution sites are [condorpool_shared, local] 2021.12.02 23:36:51.370 GMT: [CONFIG] Transformation Catalog Type used YAML TC 2021.12.02 23:36:51.386 GMT: [DEBUG] Ignoring error encountered while loading Transformation Catalog [1]: Unable to instantiate Transformation Catalog at edu.isi.pegasus.planner.catalog.transformation.TransformationFactory.loadInstance(TransformationFactory.java:164) [2]: edu.isi.pegasus.planner.catalog.transformation.impl.YAML caught java.lang.RuntimeException The File to be used as TC should be defined with the property pegasus.catalog.transformation.file at edu.isi.pegasus.planner.catalog.transformation.impl.YAML.connect(YAML.java:167) 2021.12.02 23:36:51.398 GMT: [DEBUG] Created a temporary transformation catalog backend /tmp/tc.16123204038794204925.txt 2021.12.02 23:36:51.410 GMT: [CONFIG] Transformation Catalog Type used Multiline Textual TC 2021.12.02 23:36:51.421 GMT: [CONFIG] Transformation Catalog File used /tmp/tc.16123204038794204925.txt 2021.12.02 23:36:51.449 GMT: [CONFIG] Data Configuration used for the workflow condorio 2021.12.02 23:36:51.462 GMT: [DEBUG] Directory to be created is /local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/yifan.wang/pegasus/rerun.dax/run0001 2021.12.02 23:36:51.482 GMT: [CONFIG] Metrics file will be written out to /local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/rerun.dax-0.metrics 2021.12.02 23:36:51.497 GMT: [CONFIG] The base submit directory for the workflow /local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k 2021.12.02 23:36:51.497 GMT: [CONFIG] The relative submit directory for the workflow work 2021.12.02 23:36:51.497 GMT: [CONFIG] The relative execution directory for the workflow work 2021.12.02 23:36:51.500 GMT: [INFO] event.pegasus.stampede.events dax.id rerun.dax-0 - STARTED 2021.12.02 23:36:51.574 GMT: [DEBUG] Written out stampede events for the abstract workflow to /local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/rerun.dax-0.static.bp 2021.12.02 23:36:51.597 GMT: [INFO] event.pegasus.stampede.events dax.id rerun.dax-0 (0.097 seconds) - FINISHED 2021.12.02 23:36:51.599 GMT: [INFO] event.pegasus.refinement dax.id rerun.dax-0 - STARTED 2021.12.02 23:36:51.757 GMT: [CONFIG] Proxy used for Replica Catalog is /tmp/x509up_u44039 2021.12.02 23:36:51.760 GMT: [DEBUG] [Replica Factory] Connect properties detected {proxy=/tmp/x509up_u44039, read.only=true, dax.asrc=true, cache.asrc=true} 2021.12.02 23:36:51.793 GMT: [DEBUG] [Replica Factory] Connect properties detected for implementor edu.isi.pegasus.planner.catalog.replica.impl.YAML -> {proxy=/tmp/x509up_u44039, read.only=true, dax.asrc=true, cache.asrc=true} 2021.12.02 23:36:51.795 GMT: [DEBUG] Problem while connecting with the Replica Catalog: Unable to connect to replica catalog implementation edu.isi.pegasus.planner.catalog.replica.impl.YAML with props {proxy=/tmp/x509up_u44039, read.only=true, dax.asrc=true, cache.asrc=true} 2021.12.02 23:36:51.795 GMT: [DEBUG] Setting property dagman.registration.maxjobs to 1 to set max jobs for registrations jobs category 2021.12.02 23:36:51.859 GMT: [DEBUG] Copied /tmp/tc.16123204038794204925.txt to directory /local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/catalogs 2021.12.02 23:36:51.870 GMT: [DEBUG] Copied /work/yifan.wang/4ogc/mismatch_rerun/191109/rerun_output/sites.yml to directory /local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/catalogs 2021.12.02 23:36:51.871 GMT: [DEBUG] Set Default output replica catalog properties to {pegasus.catalog.replica.output.db.driver=sqlite, pegasus.catalog.replica.output.db.url=jdbc:sqlite:/local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/rerun.dax-0.replicas.db, pegasus.catalog.replica.output=JDBCRC} 2021.12.02 23:36:51.871 GMT: [INFO] event.pegasus.check.cyclic-dependencies dax.id rerun.dax-0 - STARTED 2021.12.02 23:36:51.871 GMT: [INFO] event.pegasus.check.cyclic-dependencies dax.id rerun.dax-0 (0.0 seconds) - FINISHED 2021.12.02 23:36:51.909 GMT: [DEBUG] 0 entries found in cache of total 4 2021.12.02 23:36:51.909 GMT: [DEBUG] 0 entries found in previous submit dirs of total 4 2021.12.02 23:36:51.917 GMT: [DEBUG] 0 entries found in input directories of total 4 2021.12.02 23:36:51.917 GMT: [DEBUG] 4 entries found in abstract workflow replica store of total 4 2021.12.02 23:36:51.925 GMT: [DEBUG] 0 entries found in inherited replica store of total 4 2021.12.02 23:36:51.925 GMT: [DEBUG] 0 entries found in input replica catalog of total 4 2021.12.02 23:36:51.925 GMT: [DEBUG] 4 entries found in all replica sources of total 4 2021.12.02 23:36:51.926 GMT: [CONFIG] Data Reuse Scope for the workflow: full 2021.12.02 23:36:51.937 GMT: [DEBUG] Reducing the workflow 2021.12.02 23:36:51.937 GMT: [INFO] event.pegasus.reduce dax.id rerun.dax-0 - STARTED 2021.12.02 23:36:51.937 GMT: [DEBUG] Jobs whose o/p files already exist 2021.12.02 23:36:51.938 GMT: [DEBUG] Job pegasus-plan_finalization has no o/p files 2021.12.02 23:36:51.938 GMT: [DEBUG] Job pegasus-plan_main has no o/p files 2021.12.02 23:36:51.938 GMT: [DEBUG] Jobs whose o/p files already exist - DONE 2021.12.02 23:36:51.950 GMT: [DEBUG] pegasus-plan_main will not be deleted as not as child pegasus-plan_finalization is not marked for deletion 2021.12.02 23:36:51.957 GMT: [INFO] Nodes/Jobs Deleted from the Workflow during reduction 2021.12.02 23:36:51.961 GMT: [INFO] Nodes/Jobs Deleted from the Workflow during reduction - DONE 2021.12.02 23:36:51.969 GMT: [INFO] event.pegasus.reduce dax.id rerun.dax-0 (0.032 seconds) - FINISHED 2021.12.02 23:36:51.969 GMT: [INFO] event.pegasus.siteselection dax.id rerun.dax-0 - STARTED 2021.12.02 23:36:52.006 GMT: [DEBUG] List of executions sites is [condorpool_shared, local] 2021.12.02 23:36:52.028 GMT: [DEBUG] Job pegasus-plan_main will be mapped based on selector|hints profile key execution.site 2021.12.02 23:36:52.081 GMT: [DEBUG] Job pegasus-plan_finalization will be mapped based on selector|hints profile key execution.site 2021.12.02 23:36:52.082 GMT: [DEBUG] Setting up site mapping for job pegasus-plan_finalization 2021.12.02 23:36:52.082 GMT: [DEBUG] Job was mapped to pegasus-plan_finalization to site local 2021.12.02 23:36:52.084 GMT: [DEBUG] Setting up site mapping for job pegasus-plan_main 2021.12.02 23:36:52.113 GMT: [DEBUG] Job was mapped to pegasus-plan_main to site local 2021.12.02 23:36:52.114 GMT: [INFO] event.pegasus.stampede.events dax.id rerun.dax-0 - STARTED 2021.12.02 23:36:52.133 GMT: [DEBUG] Written out stampede metadata events for the mapped workflow to /local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/rerun.dax-0.static.bp 2021.12.02 23:36:52.133 GMT: [INFO] event.pegasus.stampede.events dax.id rerun.dax-0 (0.019 seconds) - FINISHED 2021.12.02 23:36:52.134 GMT: [INFO] event.pegasus.siteselection dax.id rerun.dax-0 (0.165 seconds) - FINISHED 2021.12.02 23:36:52.166 GMT: [DEBUG] User set mapper is not a stageable mapper. Loading a stageable mapper 2021.12.02 23:36:52.187 GMT: [DEBUG] Deployment of Worker Package needed 2021.12.02 23:36:52.384 GMT: [CONFIG] No Replica Registration Jobs will be created . 2021.12.02 23:36:52.458 GMT: [CONFIG] Transfer Implementation loaded for Stage-In [Python based Transfer Script] 2021.12.02 23:36:52.469 GMT: [CONFIG] Transfer Implementation loaded for symbolic linking Stage-In [Python based Transfer Script] 2021.12.02 23:36:52.477 GMT: [CONFIG] Transfer Implementation loaded for Inter Site [Python based Transfer Script] 2021.12.02 23:36:52.477 GMT: [CONFIG] Transfer Implementation loaded for Stage-Out [Python based Transfer Script] 2021.12.02 23:36:52.477 GMT: [DEBUG] Trying to get TCEntries for pegasus::worker on resource ALL of type STAGEABLE 2021.12.02 23:36:52.479 GMT: [DEBUG] System information for pegasus-worker-5.0.1-x86_64_deb_10.tar.gz is {arch=x86_64 os=linux osrelease=deb osversion=10} 2021.12.02 23:36:52.497 GMT: [DEBUG] Compute site sysinfo local {arch=x86_64 os=linux} 2021.12.02 23:36:52.497 GMT: [DEBUG] Worker Package Entry used for site local Logical Namespace : pegasus Logical Name : worker Version : null Resource Id : local Physical Name : file:///local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/pegasus-worker-5.0.1-x86_64_deb_10.tar.gz SysInfo : {arch=x86_64 os=linux} TYPE : STAGEABLE BYPASS : false Notifications: Container : null Compound Tx : null 2021.12.02 23:36:52.498 GMT: [DEBUG] Trying to get TCEntries for pegasus::worker on resource local of type STAGEABLE 2021.12.02 23:36:52.505 GMT: [DEBUG] Staging site for site local for worker package deployment - local 2021.12.02 23:36:52.505 GMT: [DEBUG] Trying to get TCEntries for pegasus::worker on resource ALL of type STAGEABLE 2021.12.02 23:36:52.506 GMT: [DEBUG] Selected entry Logical Namespace : pegasus Logical Name : worker Version : null Resource Id : local Physical Name : file:///local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/pegasus-worker-5.0.1-x86_64_deb_10.tar.gz SysInfo : {arch=x86_64 os=linux} TYPE : STAGEABLE BYPASS : false Notifications: Container : null Compound Tx : null 2021.12.02 23:36:52.517 GMT: [DEBUG] Creating a default TC entry for pegasus::transfer at site local 2021.12.02 23:36:52.518 GMT: [DEBUG] Remote Path set is pegasus-transfer 2021.12.02 23:36:52.518 GMT: [DEBUG] Trying to get TCEntries for pegasus::transfer on resource local of type INSTALLED 2021.12.02 23:36:52.518 GMT: [DEBUG] Entry constructed Logical Namespace : pegasus Logical Name : transfer Version : null Resource Id : local Physical Name : pegasus-transfer SysInfo : {arch=x86_64 os=linux} TYPE : INSTALLED BYPASS : false Notifications: Container : null Compound Tx : null 2021.12.02 23:36:52.518 GMT: [DEBUG] Creating a default TC entry for pegasus::kickstart at site local 2021.12.02 23:36:52.518 GMT: [DEBUG] Remote Path set is pegasus-kickstart 2021.12.02 23:36:52.518 GMT: [DEBUG] Trying to get TCEntries for pegasus::kickstart on resource local of type INSTALLED 2021.12.02 23:36:52.518 GMT: [DEBUG] Entry constructed Logical Namespace : pegasus Logical Name : kickstart Version : null Resource Id : local Physical Name : pegasus-kickstart SysInfo : {arch=x86_64 os=linux} TYPE : INSTALLED BYPASS : false Notifications: Container : null Compound Tx : null 2021.12.02 23:36:52.518 GMT: [DEBUG] Creating a default TC entry for pegasus::cleanup at site local 2021.12.02 23:36:52.519 GMT: [DEBUG] Remote Path set is pegasus-transfer 2021.12.02 23:36:52.519 GMT: [DEBUG] Trying to get TCEntries for pegasus::cleanup on resource local of type INSTALLED 2021.12.02 23:36:52.519 GMT: [DEBUG] Entry constructed Logical Namespace : pegasus Logical Name : cleanup Version : null Resource Id : local Physical Name : pegasus-transfer SysInfo : {arch=x86_64 os=linux} TYPE : INSTALLED BYPASS : false Notifications: Container : null Compound Tx : null 2021.12.02 23:36:52.519 GMT: [DEBUG] Creating a default TC entry for pegasus::seqexec at site local 2021.12.02 23:36:52.519 GMT: [DEBUG] Remote Path set is pegasus-cluster 2021.12.02 23:36:52.519 GMT: [DEBUG] Trying to get TCEntries for pegasus::seqexec on resource local of type INSTALLED 2021.12.02 23:36:52.519 GMT: [DEBUG] Entry constructed Logical Namespace : pegasus Logical Name : seqexec Version : null Resource Id : local Physical Name : pegasus-cluster SysInfo : {arch=x86_64 os=linux} TYPE : INSTALLED BYPASS : false Notifications: Container : null Compound Tx : null 2021.12.02 23:36:52.519 GMT: [DEBUG] Creating a default TC entry for pegasus::dirmanager at site local 2021.12.02 23:36:52.519 GMT: [DEBUG] Remote Path set is pegasus-transfer 2021.12.02 23:36:52.519 GMT: [DEBUG] Trying to get TCEntries for pegasus::dirmanager on resource local of type INSTALLED 2021.12.02 23:36:52.520 GMT: [DEBUG] Entry constructed Logical Namespace : pegasus Logical Name : dirmanager Version : null Resource Id : local Physical Name : pegasus-transfer SysInfo : {arch=x86_64 os=linux} TYPE : INSTALLED BYPASS : false Notifications: Container : null Compound Tx : null 2021.12.02 23:36:52.520 GMT: [DEBUG] Creating a default TC entry for pegasus::keg at site local 2021.12.02 23:36:52.520 GMT: [DEBUG] Remote Path set is pegasus-keg 2021.12.02 23:36:52.520 GMT: [DEBUG] Trying to get TCEntries for pegasus::keg on resource local of type INSTALLED 2021.12.02 23:36:52.520 GMT: [DEBUG] Entry constructed Logical Namespace : pegasus Logical Name : keg Version : null Resource Id : local Physical Name : pegasus-keg SysInfo : {arch=x86_64 os=linux} TYPE : INSTALLED BYPASS : false Notifications: Container : null Compound Tx : null 2021.12.02 23:36:52.520 GMT: [INFO] event.pegasus.cluster dax.id rerun.dax-0 - STARTED 2021.12.02 23:36:52.567 GMT: [DEBUG] Adding job to graph pegasus-plan_finalization 2021.12.02 23:36:52.585 GMT: [DEBUG] Adding job to graph pegasus-plan_main 2021.12.02 23:36:52.585 GMT: [DEBUG] Adding parents for child finalization 2021.12.02 23:36:52.587 GMT: [CONFIG] Partitioner loaded is Label Based Partitioning 2021.12.02 23:36:52.711 GMT: [CONFIG] Kickstart Stating Disabled Completely - false 2021.12.02 23:36:52.758 GMT: [CONFIG] Kickstart Stating Disabled Completely - false 2021.12.02 23:36:52.765 GMT: [CONFIG] Clusterer loaded is Topological based Vertical Clustering 2021.12.02 23:36:52.781 GMT: [INFO] Starting Graph Traversal 2021.12.02 23:36:52.782 GMT: [DEBUG] Adding to level 0 dummy 2021.12.02 23:36:52.783 GMT: [DEBUG] Adding to queue main 2021.12.02 23:36:52.783 GMT: [DEBUG] Removed dummy 2021.12.02 23:36:52.783 GMT: [DEBUG] Adding to level 1 main 2021.12.02 23:36:52.783 GMT: [DEBUG] Adding to queue finalization 2021.12.02 23:36:52.783 GMT: [DEBUG] Removed main 2021.12.02 23:36:52.783 GMT: [DEBUG] Adding to level 2 finalization 2021.12.02 23:36:52.783 GMT: [DEBUG] Removed finalization 2021.12.02 23:36:52.783 GMT: [INFO] Starting Graph Traversal - DONE 2021.12.02 23:36:52.783 GMT: [DEBUG] Partition is [finalization] corresponding to label finalization 2021.12.02 23:36:52.784 GMT: [DEBUG] Clustering jobs in partition ID2 [finalization] 2021.12.02 23:36:52.784 GMT: [DEBUG] No clustering for partition ID2 2021.12.02 23:36:52.784 GMT: [DEBUG] Partition is [main] corresponding to label main 2021.12.02 23:36:52.784 GMT: [DEBUG] Clustering jobs in partition ID1 [main] 2021.12.02 23:36:52.784 GMT: [DEBUG] No clustering for partition ID1 2021.12.02 23:36:52.784 GMT: [INFO] Determining relations between partitions 2021.12.02 23:36:52.825 GMT: [INFO] Determining relations between partitions - DONE 2021.12.02 23:36:52.826 GMT: [DEBUG] Adding job to graph pegasus-plan_finalization 2021.12.02 23:36:52.826 GMT: [DEBUG] Adding job to graph pegasus-plan_main 2021.12.02 23:36:52.833 GMT: [DEBUG] Adding parents for child finalization 2021.12.02 23:36:52.834 GMT: [CONFIG] Partitioner loaded is Level Based Partitioning 2021.12.02 23:36:52.847 GMT: [CONFIG] Kickstart Stating Disabled Completely - false 2021.12.02 23:36:52.874 GMT: [CONFIG] Kickstart Stating Disabled Completely - false 2021.12.02 23:36:52.881 GMT: [CONFIG] Clusterer loaded is Horizontal Clustering 2021.12.02 23:36:52.893 GMT: [DEBUG] Adding to level 0 dummy 2021.12.02 23:36:52.893 GMT: [DEBUG] Adding to queue main 2021.12.02 23:36:52.893 GMT: [DEBUG] Removed dummy 2021.12.02 23:36:52.894 GMT: [DEBUG] Adding to level 1 main 2021.12.02 23:36:52.894 GMT: [DEBUG] Adding to queue finalization 2021.12.02 23:36:52.894 GMT: [DEBUG] Removed main 2021.12.02 23:36:52.894 GMT: [DEBUG] Partition ID1 is :[main] 2021.12.02 23:36:52.905 GMT: [DEBUG] Clustering jobs in partition ID1 [main] 2021.12.02 23:36:52.906 GMT: [DEBUG] Clustering jobs of type pegasus-pegasus-plan-5_0_1 2021.12.02 23:36:52.917 GMT: [DEBUG] No clustering of jobs mapped to execution site local 2021.12.02 23:36:52.917 GMT: [DEBUG] Adding to level 2 finalization 2021.12.02 23:36:52.917 GMT: [DEBUG] Removed finalization 2021.12.02 23:36:52.917 GMT: [DEBUG] Partition ID2 is :[finalization] 2021.12.02 23:36:52.918 GMT: [DEBUG] Clustering jobs in partition ID2 [finalization] 2021.12.02 23:36:52.918 GMT: [DEBUG] Clustering jobs of type pegasus-pegasus-plan-5_0_1 2021.12.02 23:36:52.918 GMT: [DEBUG] No clustering of jobs mapped to execution site local 2021.12.02 23:36:52.921 GMT: [DEBUG] Replacing {pegasus-plan_main [] -> pegasus-plan_finalization [],false} with {pegasus-plan_main [] -> pegasus-plan_finalization [],false}Add to set : true 2021.12.02 23:36:52.926 GMT: [DEBUG] All clustered jobs removed from the workflow 2021.12.02 23:36:52.933 GMT: [INFO] event.pegasus.cluster dax.id rerun.dax-0 (0.413 seconds) - FINISHED 2021.12.02 23:36:52.934 GMT: [DEBUG] Initialising Replica Catalog for Planner Cache 2021.12.02 23:36:52.945 GMT: [DEBUG] [Replica Factory] Connect properties detected for implementor SimpleFile -> {output=JDBCRC, output.db.create=true, file=/local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/rerun.dax-0.getcache, read.only=true, dax.asrc=true, output.db.url=jdbc:sqlite:/local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/rerun.dax-0.replicas.db, output.db.driver=sqlite, cache.asrc=true} 2021.12.02 23:36:52.954 GMT: [DEBUG] Initialising Replica Catalog for Planner Cache 2021.12.02 23:36:52.973 GMT: [DEBUG] [Replica Factory] Connect properties detected for implementor SimpleFile -> {output=JDBCRC, output.db.create=true, file=/local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/rerun.dax-0.putcache, read.only=true, dax.asrc=true, output.db.url=jdbc:sqlite:/local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/rerun.dax-0.replicas.db, output.db.driver=sqlite, cache.asrc=true} 2021.12.02 23:36:52.974 GMT: [INFO] Grafting transfer nodes in the workflow 2021.12.02 23:36:52.985 GMT: [INFO] event.pegasus.generate.transfer-nodes dax.id rerun.dax-0 - STARTED 2021.12.02 23:36:52.987 GMT: [DEBUG] Date Reuse Engine no longer tracks deleted leaf jobs. Returning empty list 2021.12.02 23:36:53.054 GMT: [CONFIG] No Replica Registration Jobs will be created . 2021.12.02 23:36:53.074 GMT: [DEBUG] Number of transfer jobs for -1 are 0 2021.12.02 23:36:53.085 GMT: [DEBUG] Number of transfer jobs for 0 are 1 2021.12.02 23:36:53.093 GMT: [DEBUG] Number of transfer jobs for 1 are 1 2021.12.02 23:36:53.095 GMT: [CONFIG] Transfer Implementation loaded for Stage-In [Python based Transfer Script] 2021.12.02 23:36:53.113 GMT: [CONFIG] Transfer Implementation loaded for symbolic linking Stage-In [Python based Transfer Script] 2021.12.02 23:36:53.113 GMT: [CONFIG] Transfer Implementation loaded for Inter Site [Python based Transfer Script] 2021.12.02 23:36:53.113 GMT: [CONFIG] Transfer Implementation loaded for Stage-Out [Python based Transfer Script] 2021.12.02 23:36:53.116 GMT: [DEBUG] Rank ( rank => 1 priority => 500 expr => file://(?!.*(cvmfs)).*) 2021.12.02 23:36:53.149 GMT: [DEBUG] Rank ( rank => 2 priority => 400 expr => file:///cvmfs/.*) 2021.12.02 23:36:53.161 GMT: [DEBUG] Rank ( rank => 3 priority => 300 expr => root://.*) 2021.12.02 23:36:53.161 GMT: [DEBUG] Rank ( rank => 4 priority => 200 expr => gsiftp://red-gridftp.unl.edu.*) 2021.12.02 23:36:53.161 GMT: [DEBUG] Rank ( rank => 5 priority => 100 expr => gridftp://.*) 2021.12.02 23:36:53.161 GMT: [DEBUG] Rank ( rank => 6 priority => 0 expr => .*) 2021.12.02 23:36:53.161 GMT: [CONFIG] [RegexReplicaSelector] User Provided Ranked regexes are [( rank => 1 priority => 500 expr => file://(?!.*(cvmfs)).*), ( rank => 2 priority => 400 expr => file:///cvmfs/.*), ( rank => 3 priority => 300 expr => root://.*), ( rank => 4 priority => 200 expr => gsiftp://red-gridftp.unl.edu.*), ( rank => 5 priority => 100 expr => gridftp://.*), ( rank => 6 priority => 0 expr => .*)] 2021.12.02 23:36:53.193 GMT: [DEBUG] [Replica Factory] Connect properties detected for implementor File -> {file=output.map, read.only=true} 2021.12.02 23:36:53.241 GMT: [CONFIG] Output Mapper loaded is [Replica Catalog Mapper] 2021.12.02 23:36:53.241 GMT: [DEBUG] Initialising Workflow Cache File in the Submit Directory 2021.12.02 23:36:53.242 GMT: [DEBUG] [Replica Factory] Connect properties detected for implementor FlushedCache -> {output=JDBCRC, output.db.create=true, file=/local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/rerun.dax-0.cache, dax.asrc=true, output.db.url=jdbc:sqlite:/local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/rerun.dax-0.replicas.db, output.db.driver=sqlite, cache.asrc=true} 2021.12.02 23:36:53.243 GMT: [CONFIG] Transfer Refiner loaded is [Balanced Cluster Transfer Refiner( round robin distribution at file level)] 2021.12.02 23:36:53.243 GMT: [CONFIG] ReplicaSelector loaded is [Regex] 2021.12.02 23:36:53.244 GMT: [CONFIG] Submit Directory Mapper loaded is [Relative Submit Directory Mapper] 2021.12.02 23:36:53.253 GMT: [CONFIG] Staging Mapper loaded is [Flat Directory Staging Mapper] 2021.12.02 23:36:53.256 GMT: [DEBUG] SRM Server map is {} 2021.12.02 23:36:53.281 GMT: [DEBUG] SRM Server map is {} 2021.12.02 23:36:53.281 GMT: [DEBUG] Directory for job pegasus-plan_main is . 2021.12.02 23:36:53.281 GMT: [DEBUG] 2021.12.02 23:36:53.281 GMT: [DEBUG] Job being traversed is pegasus-plan_main 2021.12.02 23:36:53.282 GMT: [DEBUG] To be run at local 2021.12.02 23:36:53.282 GMT: [DEBUG] Parents of job:{} 2021.12.02 23:36:53.282 GMT: [DEBUG] Initialising Workflow Cache File for job pegasus-plan_main 2021.12.02 23:36:53.282 GMT: [DEBUG] [Replica Factory] Connect properties detected for implementor FlushedCache -> {output=JDBCRC, output.db.create=true, file=/local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/./pegasus-plan_main.cache, dax.asrc=true, output.db.url=jdbc:sqlite:/local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/rerun.dax-0.replicas.db, output.db.driver=sqlite, cache.asrc=true} 2021.12.02 23:36:53.283 GMT: [DEBUG] [RegexReplicaSelector] Selecting a pfn for lfn main.dax at site local amongst main.dax regex false -> {(/work/yifan.wang/4ogc/mismatch_rerun/191109/rerun_output/main.dax,{site=local}),} 2021.12.02 23:36:53.283 GMT: [DEBUG] Job Input files : Removed file main.dax for job pegasus-plan_main 2021.12.02 23:36:53.283 GMT: [DEBUG] Job Search Files : Removed file main.dax for job pegasus-plan_main 2021.12.02 23:36:53.283 GMT: [DEBUG] Set arguments for DAX job pegasus-plan_main to -Dpegasus.dir.storage.mapper.replica.file=main.map --basename main --cluster label,horizontal --output-sites local --staging-site condorpool_shared=condorpool_shared,local=local --cleanup inplace -vvv /work/yifan.wang/4ogc/mismatch_rerun/191109/rerun_output/main.dax 2021.12.02 23:36:53.317 GMT: [DEBUG] Directory for job pegasus-plan_finalization is . 2021.12.02 23:36:53.329 GMT: [DEBUG] 2021.12.02 23:36:53.329 GMT: [DEBUG] Job being traversed is pegasus-plan_finalization 2021.12.02 23:36:53.329 GMT: [DEBUG] To be run at local 2021.12.02 23:36:53.329 GMT: [DEBUG] Parents of job:{pegasus-plan_main,} 2021.12.02 23:36:53.329 GMT: [DEBUG] Initialising Workflow Cache File for job pegasus-plan_finalization 2021.12.02 23:36:53.330 GMT: [DEBUG] [Replica Factory] Connect properties detected for implementor FlushedCache -> {output=JDBCRC, output.db.create=true, file=/local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/./pegasus-plan_finalization.cache, dax.asrc=true, output.db.url=jdbc:sqlite:/local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/rerun.dax-0.replicas.db, output.db.driver=sqlite, cache.asrc=true} 2021.12.02 23:36:53.337 GMT: [DEBUG] [RegexReplicaSelector] Selecting a pfn for lfn finalization.dax at site local amongst finalization.dax regex false -> {(/work/yifan.wang/4ogc/mismatch_rerun/191109/rerun_output/finalization.dax,{site=local}),} 2021.12.02 23:36:53.345 GMT: [DEBUG] Job Input files : Removed file finalization.dax for job pegasus-plan_finalization 2021.12.02 23:36:53.345 GMT: [DEBUG] Job Search Files : Removed file finalization.dax for job pegasus-plan_finalization 2021.12.02 23:36:53.345 GMT: [DEBUG] Set arguments for DAX job pegasus-plan_finalization to -Dpegasus.dir.storage.mapper.replica.file=finalization.map --basename finalization --cluster label,horizontal --output-sites local --staging-site condorpool_shared=condorpool_shared,local=local --cleanup inplace -vvv /work/yifan.wang/4ogc/mismatch_rerun/191109/rerun_output/finalization.dax 2021.12.02 23:36:53.347 GMT: [INFO] event.pegasus.generate.transfer-nodes dax.id rerun.dax-0 (0.362 seconds) - FINISHED 2021.12.02 23:36:53.366 GMT: [DEBUG] Adding worker package deployment node for local 2021.12.02 23:36:53.389 GMT: [DEBUG] Skipping stage worker job for site local as worker package already in submit directory file:///local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/pegasus-worker-5.0.1-x86_64_deb_10.tar.gz 2021.12.02 23:36:53.389 GMT: [INFO] event.pegasus.generate.workdir-nodes dax.id rerun.dax-0 - STARTED 2021.12.02 23:36:53.392 GMT: [DEBUG] Trying to get TCEntries for pegasus::dirmanager on resource local of type INSTALLED 2021.12.02 23:36:53.418 GMT: [DEBUG] Creating create dir node create_dir_rerun.dax_0_local 2021.12.02 23:36:53.429 GMT: [DEBUG] Need to add edge create_dir_rerun.dax_0_local -> pegasus-plan_main 2021.12.02 23:36:53.433 GMT: [DEBUG] Adding node to the worfklow create_dir_rerun.dax_0_local 2021.12.02 23:36:53.445 GMT: [INFO] event.pegasus.generate.workdir-nodes dax.id rerun.dax-0 (0.056 seconds) - FINISHED 2021.12.02 23:36:53.445 GMT: [INFO] event.pegasus.generate.cleanup-nodes dax.id rerun.dax-0 - STARTED 2021.12.02 23:36:53.484 GMT: [CONFIG] Setting property dagman.cleanup.maxjobs to 4 to set max jobs for cleanup jobs category 2021.12.02 23:36:53.489 GMT: [DEBUG] Number of sites 1 2021.12.02 23:36:53.505 GMT: [DEBUG] Site local count jobs = 3 2021.12.02 23:36:53.505 GMT: [DEBUG] * create_dir_rerun.dax_0_local 2021.12.02 23:36:53.505 GMT: [DEBUG] * pegasus-plan_finalization 2021.12.02 23:36:53.505 GMT: [DEBUG] * pegasus-plan_main 2021.12.02 23:36:53.505 GMT: [DEBUG] local 3 2021.12.02 23:36:53.505 GMT: [DEBUG] Leaf jobs scheduled at site local are create_dir_rerun.dax_0_local,pegasus-plan_finalization,pegasus-plan_main, 2021.12.02 23:36:53.506 GMT: [DEBUG] File finalization.map will not be cleaned up for job pegasus-plan_finalization 2021.12.02 23:36:53.506 GMT: [DEBUG] File main.map will not be cleaned up for job pegasus-plan_main 2021.12.02 23:36:53.506 GMT: [DEBUG] 2021.12.02 23:36:53.506 GMT: [INFO] For site: local number of files cleaned up - 0 2021.12.02 23:36:53.506 GMT: [DEBUG] CLEANUP LIST 2021.12.02 23:36:53.506 GMT: [INFO] event.pegasus.generate.cleanup-nodes dax.id rerun.dax-0 (0.061 seconds) - FINISHED 2021.12.02 23:36:53.506 GMT: [INFO] Adding Leaf Cleanup Jobs dax.id rerun.dax-0 - STARTED 2021.12.02 23:36:53.519 GMT: [DEBUG] Directory URL is a file url for site local [file:///work/yifan.wang/4ogc/mismatch_rerun/191109/rerun_output/local-site-scratch/work] 2021.12.02 23:36:53.533 GMT: [DEBUG] Trying to get TCEntries for pegasus::cleanup on resource local of type INSTALLED 2021.12.02 23:36:53.534 GMT: [DEBUG] Creating remove directory node cleanup_rerun.dax_0_local 2021.12.02 23:36:53.541 GMT: [DEBUG] Need to add edge for DAX|DAG job pegasus-plan_finalization -> cleanup_rerun.dax_0_local 2021.12.02 23:36:53.541 GMT: [DEBUG] Need to add edge pegasus-plan_finalization -> cleanup_rerun.dax_0_local 2021.12.02 23:36:53.541 GMT: [DEBUG] Need to add edge for DAX|DAG job pegasus-plan_main -> cleanup_rerun.dax_0_local 2021.12.02 23:36:53.541 GMT: [DEBUG] Adding node to the worklfow cleanup_rerun.dax_0_local 2021.12.02 23:36:53.541 GMT: [INFO] Adding Leaf Cleanup Jobs dax.id rerun.dax-0 (0.035 seconds) - FINISHED 2021.12.02 23:36:53.543 GMT: [INFO] event.pegasus.refinement dax.id rerun.dax-0 (1.944 seconds) - FINISHED 2021.12.02 23:36:53.829 GMT: [DEBUG] Condor Version as string 8.8.9 2021.12.02 23:36:53.829 GMT: [DEBUG] Condor Version detected is 80809 2021.12.02 23:36:53.829 GMT: [INFO] Generating codes for the executable workflow 2021.12.02 23:36:53.829 GMT: [INFO] event.pegasus.code.generation dax.id rerun.dax-0 - STARTED 2021.12.02 23:36:53.830 GMT: [CONFIG] Kickstart Stating Disabled Completely - false 2021.12.02 23:36:53.861 GMT: [DEBUG] event.pegasus.code.generation dax.id rerun.dax-0 - STARTED 2021.12.02 23:36:54.073 GMT: [DEBUG] Condor Version as string 8.8.9 2021.12.02 23:36:54.073 GMT: [DEBUG] Condor Version detected is 80809 2021.12.02 23:36:54.074 GMT: [CONFIG] Kickstart Stating Disabled Completely - false 2021.12.02 23:36:54.075 GMT: [DEBUG] Applying priority of 800 to create_dir_rerun.dax_0_local 2021.12.02 23:36:54.337 GMT: [DEBUG] Mount Under Scratch Directories [/tmp, /var/tmp] 2021.12.02 23:36:54.338 GMT: [DEBUG] Trying to get TCEntries for pegasus::kickstart on resource local of type INSTALLED 2021.12.02 23:36:54.339 GMT: [DEBUG] Postscript constructed is /software/tools/pegasus/5.0/bin/pegasus-exitcode 2021.12.02 23:36:54.340 GMT: [DEBUG] Unquoted arguments are pegasus-kickstart -n pegasus::dirmanager -N null -i - -R local -L rerun.dax -T 2021-12-02T23:36:17+00:00 pegasus-transfer 2021.12.02 23:36:54.369 GMT: [DEBUG] Quoted arguments are "pegasus-kickstart -n pegasus::dirmanager -N null -i - -R local -L rerun.dax -T 2021-12-02T23:36:17+00:00 pegasus-transfer " 2021.12.02 23:36:54.370 GMT: [DEBUG] Written Submit file : /local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/./create_dir_rerun.dax_0_local.sub 2021.12.02 23:36:54.389 GMT: [DEBUG] Applying priority of 10 to pegasus-plan_main 2021.12.02 23:36:54.389 GMT: [DEBUG] Generating code for DAX job pegasus-plan_main 2021.12.02 23:36:54.389 GMT: [DEBUG] Arguments passed to SUBDAX Generator are -Dpegasus.dir.storage.mapper.replica.file=main.map --basename main --cluster label,horizontal --output-sites local --staging-site condorpool_shared=condorpool_shared,local=local --cleanup inplace -vvv /work/yifan.wang/4ogc/mismatch_rerun/191109/rerun_output/main.dax 2021.12.02 23:36:54.403 GMT: [DEBUG] Retrieving Metadata from the DAX file /work/yifan.wang/4ogc/mismatch_rerun/191109/rerun_output/main.dax 2021.12.02 23:36:54.424 GMT: [DEBUG] Submit directory in sub dax specified is ./main.dax_main 2021.12.02 23:36:54.424 GMT: [DEBUG] Base Submit directory for inner workflow set to /local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k 2021.12.02 23:36:54.424 GMT: [DEBUG] Relative Submit Directory for inner workflow set to work/././main.dax_main 2021.12.02 23:36:54.424 GMT: [DEBUG] Submit directory for inner workflow set to /local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/././main.dax_main 2021.12.02 23:36:54.424 GMT: [DEBUG] Setting list of execution sites to the same as outer workflow 2021.12.02 23:36:54.424 GMT: [DEBUG] Submit Directory for SUB DAX is /local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/././main.dax_main 2021.12.02 23:36:54.425 GMT: [DEBUG] Relative Execution Directory for SUB DAX is work/./main.dax_main 2021.12.02 23:36:54.530 GMT: [DEBUG] Trying to get TCEntries for pegasus::pegasus-plan on resource local of type INSTALLED 2021.12.02 23:36:54.530 GMT: [DEBUG] Constructing the default path to the pegasus-plan 2021.12.02 23:36:54.530 GMT: [DEBUG] pegasus-plan invocation for job pegasus-plan_main determined to be /software/tools/pegasus/5.0/bin/pegasus-plan -Dpegasus.log.*=/local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/pegasus-plan_main.pre.log -Dpegasus.workflow.root.uuid=ae73d4a8-4602-4e98-b055-d7aada564781 -Dpegasus.dir.storage.mapper.replica.file=main.map --conf /local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/pegasus.6299805290995743921.properties --dir /local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k --relative-dir work/./main.dax_main --relative-submit-dir work/././main.dax_main --basename main --sites condorpool_shared,local --staging-site condorpool_shared=condorpool_shared,local=local, --cache /local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/./pegasus-plan_main.cache --inherited-rc-files /local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/rerun.dax-0.replica.store --cluster label,horizontal --output-sites local --cleanup inplace --verbose --verbose --verbose --deferred /work/yifan.wang/4ogc/mismatch_rerun/191109/rerun_output/main.dax 2021.12.02 23:36:54.530 GMT: [DEBUG] Basename prefix for the sub workflow is main 2021.12.02 23:36:54.530 GMT: [DEBUG] Cache File for the sub workflow is /local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/././main.dax_main/main.cache 2021.12.02 23:36:54.530 GMT: [DEBUG] Trying to get TCEntries for condor::dagman on resource local of type INSTALLED 2021.12.02 23:36:54.530 GMT: [DEBUG] condor::dagman not catalogued in the Transformation Catalog. Trying to construct from the Site Catalog 2021.12.02 23:36:54.530 GMT: [DEBUG] DAGMan not catalogued in the Transformation Catalog or the Site Catalog. Trying to construct from the environment 2021.12.02 23:36:54.530 GMT: [DEBUG] Constructing path to dagman on basis of env variable CONDOR_LOCATION 2021.12.02 23:36:54.531 GMT: [DEBUG] Number of Resuce retries 999 2021.12.02 23:36:54.531 GMT: [DEBUG] Constructing arguments to dagman in 7.1.0 and later style 2021.12.02 23:36:54.606 GMT: [CONFIG] Kickstart Stating Disabled Completely - false 2021.12.02 23:36:54.697 GMT: [DEBUG] Setting job pegasus-plan_main.pre to run via No container wrapping 2021.12.02 23:36:54.697 GMT: [DEBUG] Trying to get TCEntries for pegasus::kickstart on resource local of type INSTALLED 2021.12.02 23:36:54.698 GMT: [DEBUG] Trying to get TCEntries for pegasus::transfer on resource local of type INSTALLED 2021.12.02 23:36:54.726 GMT: [DEBUG] Unquoted arguments are -p 0 -f -l . -Notification never -Debug 3 -Lockfile main.dag.lock -Dag main.dag -AllowVersionMismatch -AutoRescue 1 -DoRescueFrom 0 -MaxPre 1 2021.12.02 23:36:54.726 GMT: [DEBUG] Quoted arguments are " -p 0 -f -l . -Notification never -Debug 3 -Lockfile main.dag.lock -Dag main.dag -AllowVersionMismatch -AutoRescue 1 -DoRescueFrom 0 -MaxPre 1" 2021.12.02 23:36:54.727 GMT: [DEBUG] Written Submit file : /local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/./pegasus-plan_main.sub 2021.12.02 23:36:54.727 GMT: [DEBUG] Applying priority of 20 to pegasus-plan_finalization 2021.12.02 23:36:54.727 GMT: [DEBUG] Generating code for DAX job pegasus-plan_finalization 2021.12.02 23:36:54.727 GMT: [DEBUG] Arguments passed to SUBDAX Generator are -Dpegasus.dir.storage.mapper.replica.file=finalization.map --basename finalization --cluster label,horizontal --output-sites local --staging-site condorpool_shared=condorpool_shared,local=local --cleanup inplace -vvv /work/yifan.wang/4ogc/mismatch_rerun/191109/rerun_output/finalization.dax 2021.12.02 23:36:54.778 GMT: [DEBUG] Retrieving Metadata from the DAX file /work/yifan.wang/4ogc/mismatch_rerun/191109/rerun_output/finalization.dax 2021.12.02 23:36:54.827 GMT: [DEBUG] Submit directory in sub dax specified is ./finalization.dax_finalization 2021.12.02 23:36:54.827 GMT: [DEBUG] Base Submit directory for inner workflow set to /local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k 2021.12.02 23:36:54.827 GMT: [DEBUG] Relative Submit Directory for inner workflow set to work/././finalization.dax_finalization 2021.12.02 23:36:54.827 GMT: [DEBUG] Submit directory for inner workflow set to /local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/././finalization.dax_finalization 2021.12.02 23:36:54.827 GMT: [DEBUG] Setting list of execution sites to the same as outer workflow 2021.12.02 23:36:54.827 GMT: [DEBUG] Parent DAX Jobs Transient RC's are [null] 2021.12.02 23:36:54.827 GMT: [DEBUG] Submit Directory for SUB DAX is /local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/././finalization.dax_finalization 2021.12.02 23:36:54.827 GMT: [DEBUG] Relative Execution Directory for SUB DAX is work/./finalization.dax_finalization 2021.12.02 23:36:54.827 GMT: [DEBUG] Trying to get TCEntries for pegasus::pegasus-plan on resource local of type INSTALLED 2021.12.02 23:36:54.827 GMT: [DEBUG] Constructing the default path to the pegasus-plan 2021.12.02 23:36:54.827 GMT: [DEBUG] pegasus-plan invocation for job pegasus-plan_finalization determined to be /software/tools/pegasus/5.0/bin/pegasus-plan -Dpegasus.log.*=/local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/pegasus-plan_finalization.pre.log -Dpegasus.workflow.root.uuid=ae73d4a8-4602-4e98-b055-d7aada564781 -Dpegasus.dir.storage.mapper.replica.file=finalization.map --conf /local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/pegasus.6299805290995743921.properties --dir /local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k --relative-dir work/./finalization.dax_finalization --relative-submit-dir work/././finalization.dax_finalization --basename finalization --sites condorpool_shared,local --staging-site condorpool_shared=condorpool_shared,local=local, --cache null,/local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/./pegasus-plan_finalization.cache --inherited-rc-files /local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/rerun.dax-0.replica.store --cluster label,horizontal --output-sites local --cleanup inplace --verbose --verbose --verbose --deferred /work/yifan.wang/4ogc/mismatch_rerun/191109/rerun_output/finalization.dax 2021.12.02 23:36:54.827 GMT: [DEBUG] Basename prefix for the sub workflow is finalization 2021.12.02 23:36:54.827 GMT: [DEBUG] Cache File for the sub workflow is /local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/././finalization.dax_finalization/finalization.cache 2021.12.02 23:36:54.827 GMT: [DEBUG] Trying to get TCEntries for condor::dagman on resource local of type INSTALLED 2021.12.02 23:36:54.827 GMT: [DEBUG] condor::dagman not catalogued in the Transformation Catalog. Trying to construct from the Site Catalog 2021.12.02 23:36:54.827 GMT: [DEBUG] DAGMan not catalogued in the Transformation Catalog or the Site Catalog. Trying to construct from the environment 2021.12.02 23:36:54.828 GMT: [DEBUG] Constructing path to dagman on basis of env variable CONDOR_LOCATION 2021.12.02 23:36:54.828 GMT: [DEBUG] Number of Resuce retries 999 2021.12.02 23:36:54.828 GMT: [DEBUG] Constructing arguments to dagman in 7.1.0 and later style 2021.12.02 23:36:54.829 GMT: [DEBUG] Setting job pegasus-plan_finalization.pre to run via No container wrapping 2021.12.02 23:36:54.829 GMT: [DEBUG] Trying to get TCEntries for pegasus::kickstart on resource local of type INSTALLED 2021.12.02 23:36:54.871 GMT: [DEBUG] Trying to get TCEntries for pegasus::transfer on resource local of type INSTALLED 2021.12.02 23:36:54.872 GMT: [DEBUG] Unquoted arguments are -p 0 -f -l . -Notification never -Debug 3 -Lockfile finalization.dag.lock -Dag finalization.dag -AllowVersionMismatch -AutoRescue 1 -DoRescueFrom 0 -MaxPre 1 2021.12.02 23:36:54.872 GMT: [DEBUG] Quoted arguments are " -p 0 -f -l . -Notification never -Debug 3 -Lockfile finalization.dag.lock -Dag finalization.dag -AllowVersionMismatch -AutoRescue 1 -DoRescueFrom 0 -MaxPre 1" 2021.12.02 23:36:54.873 GMT: [DEBUG] Written Submit file : /local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/./pegasus-plan_finalization.sub 2021.12.02 23:36:54.873 GMT: [DEBUG] Applying priority of 1000 to cleanup_rerun.dax_0_local 2021.12.02 23:36:54.873 GMT: [DEBUG] Trying to get TCEntries for pegasus::kickstart on resource local of type INSTALLED 2021.12.02 23:36:54.873 GMT: [DEBUG] Postscript constructed is /software/tools/pegasus/5.0/bin/pegasus-exitcode 2021.12.02 23:36:54.874 GMT: [DEBUG] Unquoted arguments are pegasus-kickstart -n pegasus::cleanup -N null -i - -R local -L rerun.dax -T 2021-12-02T23:36:17+00:00 pegasus-transfer 2021.12.02 23:36:54.874 GMT: [DEBUG] Quoted arguments are "pegasus-kickstart -n pegasus::cleanup -N null -i - -R local -L rerun.dax -T 2021-12-02T23:36:17+00:00 pegasus-transfer " 2021.12.02 23:36:54.874 GMT: [DEBUG] Written Submit file : /local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/./cleanup_rerun.dax_0_local.sub 2021.12.02 23:36:54.874 GMT: [DEBUG] event.pegasus.code.generation dax.id rerun.dax-0 (1.013 seconds) - FINISHED 2021.12.02 23:36:54.874 GMT: [DEBUG] Written Dag File : rerun.dax-0.dag.tmp 2021.12.02 23:36:54.874 GMT: [DEBUG] Writing out the DOT file 2021.12.02 23:36:55.017 GMT: [DEBUG] Written out notifications to rerun.dax-0.notify 2021.12.02 23:36:55.018 GMT: [DEBUG] Writing out the DAX Replica Store to file /local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/rerun.dax-0.replica.store 2021.12.02 23:36:55.018 GMT: [DEBUG] [Replica Factory] Connect properties detected for implementor SimpleFile -> {output=JDBCRC, output.db.create=true, file=/local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/rerun.dax-0.replica.store, dax.asrc=true, output.db.url=jdbc:sqlite:/local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/rerun.dax-0.replicas.db, output.db.driver=sqlite, cache.asrc=true} 2021.12.02 23:36:55.019 GMT: [DEBUG] Written out dax replica store to rerun.dax-0.replica.store 2021.12.02 23:36:55.061 GMT: [DEBUG] Written out stampede events for the executable workflow to /local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/rerun.dax-0.static.bp 2021.12.02 23:36:55.119 GMT: [DEBUG] Proxy whose DN will be logged in the braindump file /tmp/x509up_u44039 2021.12.02 23:36:55.705 GMT: [DEBUG] Unable to determine GRID DN class org.globus.gsi.gssapi.GlobusGSSException: Defective credential detected [Caused by: proxy not found] 2021.12.02 23:36:55.756 GMT: [DEBUG] Written out braindump to /local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/braindump.yml 2021.12.02 23:36:55.756 GMT: [DEBUG] Renamed temporary dag file to : /local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/rerun.dax-0.dag 2021.12.02 23:36:55.790 GMT: [DEBUG] Executing /usr/bin/condor_submit_dag -append executable=/software/tools/pegasus/5.0/bin/pegasus-dagman -no_submit -MaxPre 1 -MaxPost 20 -append +pegasus_wf_uuid="ae73d4a8-4602-4e98-b055-d7aada564781" -append +pegasus_root_wf_uuid="ae73d4a8-4602-4e98-b055-d7aada564781" -append +pegasus_wf_name="rerun.dax-0" -append +pegasus_wf_time="20211202T233644+0000" -append +pegasus_version="5.0.1" -append +pegasus_job_class=11 -append +pegasus_cluster_size=1 -append +pegasus_site="local" -append +pegasus_execution_sites="condorpool_shared,local" -append +pegasus_wf_xformation="pegasus::dagman" rerun.dax-0.dag with environment = PATH=/software/tools/pegasus/5.0/bin/:/work/yifan.wang/virtualenv/ringdown/bin:/work/yifan.wang/lscsoft/opt/accomlal/bin:/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games;PKG_CONFIG_PATH=/work/yifan.wang/lscsoft/opt/accomlal/lib/pkgconfig:;LAL_DATA_PATH=/atlas/recent/cbc/ROM_data/;TZ=:/etc/localtime;MODULEPATH=/etc/environment-modules/modules:/usr/share/modules/versions:/usr/share/modules/$MODULE_VERSION/modulefiles:/usr/share/modules/modulefiles;PEGASUS_PERL_DIR=/software/tools/pegasus/5.0/lib/pegasus/perl;DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/44039/bus;MAIL=/var/mail/yifan.wang;LD_LIBRARY_PATH=/work/yifan.wang/eccsearch/C:/work/yifan.wang/1-ecc-waveform-PE/IMRPhenomDecc:/work/yifan.wang/lscsoft/opt/accomlal/lib/:/work/yifan.wang/lscsoft/MultiNest/lib:;LOGNAME=yifan.wang;PWD=/work/yifan.wang/4ogc/mismatch_rerun/191109/rerun_output;PYTHONPATH=/software/tools/pegasus/5.0/lib/python3.7/dist-packages/:/work/yifan.wang/eccsearch/waveform/ihes-teobresum/Python:/work/yifan.wang/eccsearch/eccwaveform:/work/yifan.wang/1-ecc-waveform-PE/IMRPhenomDecc:/work/yifan.wang/lscsoft/src/TaylorF2e:;SHELL=/bin/bash;BASH_ENV=/usr/share/modules/init/bash;LM_LICENSE_FILE=/opt/matlab/default/etc/license.dat;OLDPWD=/work/yifan.wang/4ogc/mismatch_rerun/191109;TMPDIR=/local/user/yifan.wang;VIRTUAL_ENV=/work/yifan.wang/virtualenv/ringdown;MODULEPATH_modshare=/etc/environment-modules/modules:1:/usr/share/modules/$MODULE_VERSION/modulefiles:1:/usr/share/modules/modulefiles:1:/usr/share/modules/versions:1;LC_ALL=C;PEGASUS_PYTHON_DIR=/software/tools/pegasus/5.0/lib/python3.7/dist-packages;LC_CTYPE=en_US.UTF-8;SHLVL=2;SLACK_BOT_TOKEN=xoxp-1889174914644-1876230893430-1893291262468-e9d8766407c79a32862f209441631a1f;CONDOR_LOCATION=/usr;LOADEDMODULES=;SCRATCH=/local/user/yifan.wang;PEGASUS_SCHEMA_DIR=/software/tools/pegasus/5.0/share/pegasus/schema;JAVA_HOME=/usr/lib/jvm/default-java;TERM=xterm-256color;ENV=/usr/share/modules/init/profile.sh;LANG=en_US.UTF-8;XDG_SESSION_ID=4674;XDG_SESSION_TYPE=tty;PEGASUS_PYTHON_EXTERNALS_DIR=/software/tools/pegasus/5.0/lib/pegasus/externals/python;XDG_SESSION_CLASS=user;_=/software/tools/pegasus/5.0/bin/pegasus-plan;PEGASUS_JAVA_DIR=/software/tools/pegasus/5.0/share/pegasus/java;SSH_TTY=/dev/pts/15;SSH_CLIENT=91.34.57.164 56173 22;USER=yifan.wang;CLASSPATH=/software/tools/pegasus/5.0/share/pegasus/java/accessors.jar:/software/tools/pegasus/5.0/share/pegasus/java/bcprov-jdk15on-150.jar:/software/tools/pegasus/5.0/share/pegasus/java/btf-1.2.jar:/software/tools/pegasus/5.0/share/pegasus/java/commons-lang3-3.4.jar:/software/tools/pegasus/5.0/share/pegasus/java/commons-logging.jar:/software/tools/pegasus/5.0/share/pegasus/java/commons-pool.jar:/software/tools/pegasus/5.0/share/pegasus/java/exist-optional.jar:/software/tools/pegasus/5.0/share/pegasus/java/exist.jar:/software/tools/pegasus/5.0/share/pegasus/java/gram-2.1.0.jar:/software/tools/pegasus/5.0/share/pegasus/java/gridftp-2.1.0.jar:/software/tools/pegasus/5.0/share/pegasus/java/gson-2.2.2.jar:/software/tools/pegasus/5.0/share/pegasus/java/gss-2.1.0.jar:/software/tools/pegasus/5.0/share/pegasus/java/guava-16.0.1.jar:/software/tools/pegasus/5.0/share/pegasus/java/hamcrest-core-1.3.jar:/software/tools/pegasus/5.0/share/pegasus/java/io-2.1.0.jar:/software/tools/pegasus/5.0/share/pegasus/java/jackson-annotations-2.9.10.jar:/software/tools/pegasus/5.0/share/pegasus/java/jackson-core-2.9.10.jar:/software/tools/pegasus/5.0/share/pegasus/java/jackson-coreutils-1.8.jar:/software/tools/pegasus/5.0/share/pegasus/java/jackson-databind-2.9.10.jar:/software/tools/pegasus/5.0/share/pegasus/java/jackson-dataformat-yaml-2.9.10.jar:/software/tools/pegasus/5.0/share/pegasus/java/jakarta-oro.jar:/software/tools/pegasus/5.0/share/pegasus/java/java-getopt-1.0.9.jar:/software/tools/pegasus/5.0/share/pegasus/java/javax.json-1.0.4.jar:/software/tools/pegasus/5.0/share/pegasus/java/jcodings-1.0.46.jar:/software/tools/pegasus/5.0/share/pegasus/java/joda-time-2.3.jar:/software/tools/pegasus/5.0/share/pegasus/java/joni-2.1.31.jar:/software/tools/pegasus/5.0/share/pegasus/java/json-schema-validator-1.0.41.jar:/software/tools/pegasus/5.0/share/pegasus/java/jsse-2.1.0.jar:/software/tools/pegasus/5.0/share/pegasus/java/libphonenumber-6.2.jar:/software/tools/pegasus/5.0/share/pegasus/java/log4j-1.2.17.jar:/software/tools/pegasus/5.0/share/pegasus/java/mailapi-1.4.3.jar:/software/tools/pegasus/5.0/share/pegasus/java/msg-simple-1.1.jar:/software/tools/pegasus/5.0/share/pegasus/java/myproxy-2.1.0.jar:/software/tools/pegasus/5.0/share/pegasus/java/mysql-connector-java-5.1.47.jar:/software/tools/pegasus/5.0/share/pegasus/java/pegasus-aws-batch.jar:/software/tools/pegasus/5.0/share/pegasus/java/pegasus.jar:/software/tools/pegasus/5.0/share/pegasus/java/postgresql-8.1dev-400.jdbc3.jar:/software/tools/pegasus/5.0/share/pegasus/java/resolver.jar:/software/tools/pegasus/5.0/share/pegasus/java/rhino-1.7R4.jar:/software/tools/pegasus/5.0/share/pegasus/java/snakeyaml-1.25.jar:/software/tools/pegasus/5.0/share/pegasus/java/sqlite-jdbc-3.8.11.2.jar:/software/tools/pegasus/5.0/share/pegasus/java/ssl-proxies-2.1.0-patched.jar:/software/tools/pegasus/5.0/share/pegasus/java/super-csv-2.4.0.jar:/software/tools/pegasus/5.0/share/pegasus/java/uri-template-0.9.jar:/software/tools/pegasus/5.0/share/pegasus/java/vdl.jar:/software/tools/pegasus/5.0/share/pegasus/java/xercesImpl.jar:/software/tools/pegasus/5.0/share/pegasus/java/xml-apis-1.4.01.jar:/software/tools/pegasus/5.0/share/pegasus/java/xmlParserAPIs.jar:/software/tools/pegasus/5.0/share/pegasus/java/xmldb.jar:/software/tools/pegasus/5.0/share/pegasus/java/xmlrpc.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/apache-client-2.0.0-preview-2.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/batch-2.0.0-preview-2.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/commons-logging-api-1.1.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/core-2.0.0-preview-2.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/http-client-spi-2.0.0-preview-2.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/httpclient-4.5.2.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/httpcore-4.4.4.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/jackson-annotations-2.8.8.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/jackson-databind-2.8.8.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/jackson-jr-objects-2.9.0.pr4.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/joda-time-2.8.1.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/jopt-simple-5.0.4.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/logs-2.0.0-preview-2.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/metrics-spi-2.0.0-preview-2.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/netty-nio-client-2.0.0-preview-2.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/s3-2.0.0-preview-2.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/slf4j-api-1.7.25.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/slf4j-log4j12-1.7.25.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/thirdparty-logging.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/thirdparty.jar:/software/tools/pegasus/5.0/share/pegasus/java/aws/utils-2.0.0-preview-2.jar;C_INCLUDE_PATH=/work/yifan.wang/lscsoft/opt/accomlal/include:;PEGASUS_BIN_DIR=/software/tools/pegasus/5.0/bin;SSH_CONNECTION=91.34.57.164 56173 130.75.116.16 22;MODULESHOME=/usr/share/modules;PEGASUS_CONF_DIR=/software/tools/pegasus/5.0/etc;TMP=/local/user/yifan.wang;PYCBC_WAVEFORM=taylorf2e;PEGASUS_ORIG_CLASSPATH=;MODULES_CMD=/usr/lib/x86_64-linux-gnu/modulecmd.tcl;LIGO_DATAFIND_SERVER=ldr.atlas.local:80;GW_DATAFIND_SERVER=;XDG_RUNTIME_DIR=/run/user/44039;PEGASUS_SHARE_DIR=/software/tools/pegasus/5.0/share/pegasus;HOME=/work/yifan.wang; 2021.12.02 23:36:56.091 GMT: 2021.12.02 23:36:56.101 GMT: ----------------------------------------------------------------------- 2021.12.02 23:36:56.109 GMT: File for submitting this DAG to HTCondor : rerun.dax-0.dag.condor.sub 2021.12.02 23:36:56.121 GMT: Log of DAGMan debugging messages : rerun.dax-0.dag.dagman.out 2021.12.02 23:36:56.129 GMT: Log of HTCondor library output : rerun.dax-0.dag.lib.out 2021.12.02 23:36:56.137 GMT: Log of HTCondor library error messages : rerun.dax-0.dag.lib.err 2021.12.02 23:36:56.145 GMT: Log of the life of condor_dagman itself : rerun.dax-0.dag.dagman.log 2021.12.02 23:36:56.153 GMT: 2021.12.02 23:36:56.162 GMT: -no_submit given, not submitting DAG to HTCondor. You can do this with: 2021.12.02 23:36:56.173 GMT: ----------------------------------------------------------------------- 2021.12.02 23:36:56.189 GMT: [DEBUG] condor_submit_dag exited with status 0 2021.12.02 23:36:56.210 GMT: [DEBUG] Updated environment for dagman is environment = _CONDOR_SCHEDD_ADDRESS_FILE=/local/condor/spool/.schedd_address;_CONDOR_MAX_DAGMAN_LOG=0;_CONDOR_SCHEDD_DAEMON_AD_FILE=/local/condor/spool/.schedd_classad;_CONDOR_DAGMAN_LOG=rerun.dax-0.dag.dagman.out;PEGASUS_METRICS=true; 2021.12.02 23:36:56.211 GMT: [INFO] event.pegasus.code.generation dax.id rerun.dax-0 (2.382 seconds) - FINISHED 2021.12.02 23:36:56.269 GMT: [DEBUG] Executing /software/tools/pegasus/5.0/bin/pegasus-db-admin update -t master -c /local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/pegasus.6299805290995743921.properties 2021.12.02 23:37:17.062 GMT: Database version: '5.0.1' (sqlite:////work/yifan.wang/.pegasus/workflow.db) 2021.12.02 23:37:18.265 GMT: [DEBUG] pegasus-db-admin exited with status 0 2021.12.02 23:37:18.267 GMT: [DEBUG] Executing /software/tools/pegasus/5.0/bin/pegasus-db-admin create -Dpegasus.catalog.replica.db.url=jdbc:sqlite:/local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/rerun.dax-0.replicas.db -Dpegasus.catalog.replica=JDBCRC -Dpegasus.catalog.replica.db.driver=sqlite -t jdbcrc -c /local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/pegasus.6299805290995743921.properties 2021.12.02 23:37:32.985 GMT: Pegasus database was successfully created. 2021.12.02 23:37:32.993 GMT: Database version: '5.0.1' (sqlite:////local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/rerun.dax-0.replicas.db) 2021.12.02 23:37:33.181 GMT: [DEBUG] pegasus-db-admin exited with status 0 2021.12.02 23:37:33.181 GMT: Output replica catalog set to jdbc:sqlite:/local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work/rerun.dax-0.replicas.db 2021.12.02 23:37:33.181 GMT: [DEBUG] Executing /software/tools/pegasus/5.0/bin/pegasus-run --nogrid /local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work 2021.12.02 23:37:38.153 GMT: Submitting to condor rerun.dax-0.dag.condor.sub 2021.12.02 23:37:38.365 GMT: 2021.12.02 23:37:38.377 GMT: Your workflow has been started and is running in the base directory: 2021.12.02 23:37:38.385 GMT: 2021.12.02 23:37:38.397 GMT: /local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work 2021.12.02 23:37:38.405 GMT: 2021.12.02 23:37:38.417 GMT: *** To monitor the workflow you can run *** 2021.12.02 23:37:38.429 GMT: 2021.12.02 23:37:38.437 GMT: pegasus-status -l /local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work 2021.12.02 23:37:38.445 GMT: 2021.12.02 23:37:38.453 GMT: *** To remove your workflow run *** 2021.12.02 23:37:38.465 GMT: 2021.12.02 23:37:38.473 GMT: pegasus-remove /local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work 2021.12.02 23:37:38.581 GMT: [DEBUG] Submission of workflow exited with status 0 2021.12.02 23:37:38.618 GMT: [DEBUG] Sending Planner Metrics to [1 of 1] http://metrics.pegasus.isi.edu/metrics 2021.12.02 23:37:40.021 GMT: [DEBUG] Metrics succesfully sent to the server 2021.12.02 23:37:40.041 GMT: Time taken to execute is 56.2 seconds 2021.12.02 23:37:40.041 GMT: [INFO] event.pegasus.planner planner.version 5.0.1 (55.814 seconds) - FINISHED Querying Pegasus database for workflow stored in /local/user/yifan.wang/pycbc-tmp.ZgTpPLPf3k/work This may take up to 120 seconds. Please wait.................. Done. Workflow submission completed successfully. The Pegasus dashboard URL for this workflow is: https://condor1.atlas.local/pegasus/u/yifan.wang/r/188/w?wf_uuid=ae73d4a8-4602-4e98-b055-d7aada564781 Note that it make take a while for the dashboard entry to appear while the workflow is parsed by the dashboard. The delay can be on the order of one hour for very large workflows.