Generating concrete workflow 2021.12.31 13:12:00.176 GMT: [WARNING] profile condor.accounting_group_user is empty, Removing! Rank ( rank => 1 priority => 500 expr => file://(?!.*(cvmfs)).*) Rank ( rank => 2 priority => 400 expr => file:///cvmfs/.*) Rank ( rank => 3 priority => 300 expr => root://.*) Rank ( rank => 4 priority => 200 expr => gsiftp://red-gridftp.unl.edu.*) Rank ( rank => 5 priority => 100 expr => gridftp://.*) Rank ( rank => 6 priority => 0 expr => .*) 2021.12.31 13:12:00.737 GMT: 2021.12.31 13:12:00.743 GMT: ----------------------------------------------------------------------- 2021.12.31 13:12:00.748 GMT: File for submitting this DAG to HTCondor : inj-0.dag.condor.sub 2021.12.31 13:12:00.753 GMT: Log of DAGMan debugging messages : inj-0.dag.dagman.out 2021.12.31 13:12:00.759 GMT: Log of HTCondor library output : inj-0.dag.lib.out 2021.12.31 13:12:00.764 GMT: Log of HTCondor library error messages : inj-0.dag.lib.err 2021.12.31 13:12:00.770 GMT: Log of the life of condor_dagman itself : inj-0.dag.dagman.log 2021.12.31 13:12:00.775 GMT: 2021.12.31 13:12:00.780 GMT: -no_submit given, not submitting DAG to HTCondor. You can do this with: 2021.12.31 13:12:00.791 GMT: ----------------------------------------------------------------------- 2021.12.31 13:12:01.850 GMT: [ERROR] 2021-12-31 13:12:01,850:ERROR:Pegasus.db.admin.commands(115): You database was created with a newer Pegasus version. It will not work properly with the current version. 2021.12.31 13:12:01.855 GMT: [ERROR] Please, run 'pegasus-db-admin downgrade' with the latest Pegasus to downgrade your database. 2021.12.31 13:12:01.874 GMT: [FATAL ERROR] [1] java.lang.RuntimeException: Pegasus was unable to update the the worflow database file found at ~/.pegasus/workflow.db . If this file is corrupted, a solution for problem is to remove the file with the command: rm -f ~/.pegasus/workflow.db - but note that doing so will remove old workflows from the Pegasus Dashboard. at edu.isi.pegasus.planner.common.PegasusDBAdmin.checkDatabase(PegasusDBAdmin.java:188) Generating concrete workflow 2021.12.31 13:12:13.105 GMT: [WARNING] profile condor.accounting_group_user is empty, Removing! Rank ( rank => 1 priority => 500 expr => file://(?!.*(cvmfs)).*) Rank ( rank => 2 priority => 400 expr => file:///cvmfs/.*) Rank ( rank => 3 priority => 300 expr => root://.*) Rank ( rank => 4 priority => 200 expr => gsiftp://red-gridftp.unl.edu.*) Rank ( rank => 5 priority => 100 expr => gridftp://.*) Rank ( rank => 6 priority => 0 expr => .*) 2021.12.31 13:12:13.645 GMT: 2021.12.31 13:12:13.651 GMT: ----------------------------------------------------------------------- 2021.12.31 13:12:13.657 GMT: File for submitting this DAG to HTCondor : inj-0.dag.condor.sub 2021.12.31 13:12:13.662 GMT: Log of DAGMan debugging messages : inj-0.dag.dagman.out 2021.12.31 13:12:13.668 GMT: Log of HTCondor library output : inj-0.dag.lib.out 2021.12.31 13:12:13.673 GMT: Log of HTCondor library error messages : inj-0.dag.lib.err 2021.12.31 13:12:13.678 GMT: Log of the life of condor_dagman itself : inj-0.dag.dagman.log 2021.12.31 13:12:13.684 GMT: 2021.12.31 13:12:13.689 GMT: -no_submit given, not submitting DAG to HTCondor. You can do this with: 2021.12.31 13:12:13.700 GMT: ----------------------------------------------------------------------- 2021.12.31 13:12:14.790 GMT: Created Pegasus database in: sqlite:////work/yifan.wang/.pegasus/workflow.db 2021.12.31 13:12:14.795 GMT: Your database is compatible with Pegasus version: 4.9.3 2021.12.31 13:12:14.891 GMT: Submitting to condor inj-0.dag.condor.sub 2021.12.31 13:12:14.957 GMT: Submitting job(s). 2021.12.31 13:12:14.963 GMT: 1 job(s) submitted to cluster 23460389. 2021.12.31 13:12:14.968 GMT: 2021.12.31 13:12:14.973 GMT: Your workflow has been started and is running in the base directory: 2021.12.31 13:12:14.979 GMT: 2021.12.31 13:12:14.984 GMT: /local/user/yifan.wang/pycbc-tmp.ioNCftPQ8U/work 2021.12.31 13:12:14.990 GMT: 2021.12.31 13:12:14.995 GMT: *** To monitor the workflow you can run *** 2021.12.31 13:12:15.000 GMT: 2021.12.31 13:12:15.006 GMT: pegasus-status -l /local/user/yifan.wang/pycbc-tmp.ioNCftPQ8U/work 2021.12.31 13:12:15.011 GMT: 2021.12.31 13:12:15.017 GMT: *** To remove your workflow run *** 2021.12.31 13:12:15.022 GMT: 2021.12.31 13:12:15.027 GMT: pegasus-remove /local/user/yifan.wang/pycbc-tmp.ioNCftPQ8U/work 2021.12.31 13:12:15.033 GMT: 2021.12.31 13:12:15.424 GMT: Time taken to execute is 2.26 seconds Querying Pegasus database for workflow stored in /local/user/yifan.wang/pycbc-tmp.ioNCftPQ8U/work This may take up to 120 seconds. Please wait......... Done. basename: missing operand Try 'basename --help' for more information.